Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01961 ATGTCGTTGCACCGTGGTGAAGAAGATGAGCTCTACGAGCAGCTGTGGAAGGCGTGTGCAGAACCCCATGTGGAAATTCCTCGCGTAGGCCAAAGGGTCTTCTACTTCCCTCAGGGACACATGGAACAGTTAGAAGTATCAACAAATCAGGAACTAAATCAAAGGATTCCACTGTTCAAACTTCCCTCCGAGATCCTTTGTCGTGTCGTCAACGTCCATTTACTGGCTGAACAAGAAACAGATGAGGTTTACGCGCAGATTACTCTGGTGCCGGAAAATAATCAAACTGAGCCTACATGCCCTGATCCGTGCCCTTCTGAAGTTCCAAAGCCAAGAGTTCACTCCTTCTGCAAAGTCTTAACCGCCTCTGATACAAGCACCCATGGTGGCTTCTCTGTCCTCCGGAAGCATGCCACTGAATGTCTTCCAGCATTGGACATGTCGAAATCAACCCCAACTCAGGAATTGGTTGCTCAGGATCTTCATGGATATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCGCGTAGACACTTGCTCACAACCGGATGGAGTACTTTTGTGACTTCCAAGAGATTAGTTGCTGGAGACACATTTGTGTTTCTGAGAGGGAGCAATGGAGAACTACGAGTTGGGGTGAGGCGTCTTACTCCTGTTCAGAGCAGCATGCCATCATCTGTGATTTCTAGTCAGAGCATGCACCTAGGAGTTCTTGCAACTGCATCTCATGCTGTAGCAACTCAGACTCTTTTTGTTGTATATTATAAGCCAAGGACAAGCCAGTTTATTGTAAGTGTGAACAAGTATTTGGAGGCTATCAACCACAAATGTACTGTTGGCATGAGATTGAAGACGAGGTTTGAAGGGGATGATTCTACTGAAACAGACAAAAGATCTTCGGGCACAATAATTGGAGTAGAGGATATTTCCCCTCATTGGGTAAATTCAAAATGGCGATCACTCAAGGTTCAATGGGATGAATCTCCATCTTTTCCAAGACCTGATAGAGTTTCACCATGGGAGATAGAACCCATTCTGGCTTCTGTTCCTACAACAATATCATCTCAACCTGTTGTTATAAAGAATAAAAGGCCTCGACAAGCAAGTGAAGTTCCAGATCTTGGAGACACACCATTAATTGCCCCAACTTTCTGGGATGCTGGGCTCACACAGTCTGATATTACACAACTTGGTGTTATGGCCGAAAGCAAAAGGAGTGAAAGTAATGCTCATATGTGGCATCATAACAATATGAACAGCAGCAATGGTATATCAATGAATCAGAGAAAAGCAAGTTGGCTGTCTTCTCCTTCTCATTTATATCTAGACACGACTGATGATAGCAAGAGCATATCAGCTTCGCCTATTTCAAAAACTCACTCGGAAAGATTGAACAATGATCATTTCCTTGAGCAGGTTGACAAGGAGATCAGCAAAGTAGAGCCTGCAACTGGCTGCAGATTGTTTGGGATTGACCTTATTGATCATAAAAAGAGCAACTCTCTTTCTGTAGATAATGCACCTGGAGTCATCTCCGAGGGTAGAACTGATGTAAACCATGAGTCTGATATCTCAAAGGCTTCTAAAGAATGGAAACAAGAACAGCTACAAGTATCCCCAAAAGAGAATCAAAACAAGCAAATTTGTAGTAGAAGTTGCACTAAGGTTCAAATGCAGGGGGTTGCAGTGGGTCGTGCGGTGGACTTGACCACATTGGATGGGTATGATCAACTTGTAGATGAATTGGAGAAGATGTTTGACATAAAGGGACAGCTTCAACACAGGAACAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTCGTTGGTGATGATCCATGGCCTGAATTCTGTAATATGGTGAGAAGAATCTTCATTTGCTCCAGCCAGGATGTGCACAAACTGAGCTCAGGGAGCAAACTACCTATCTCTTCAGTGGAAGAGATTGTAATAAGCTCAGACACAACTGAGACCTGA 1989 0.4389 MSLHRGEEDELYEQLWKACAEPHVEIPRVGQRVFYFPQGHMEQLEVSTNQELNQRIPLFKLPSEILCRVVNVHLLAEQETDEVYAQITLVPENNQTEPTCPDPCPSEVPKPRVHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSKSTPTQELVAQDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGSNGELRVGVRRLTPVQSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIVSVNKYLEAINHKCTVGMRLKTRFEGDDSTETDKRSSGTIIGVEDISPHWVNSKWRSLKVQWDESPSFPRPDRVSPWEIEPILASVPTTISSQPVVIKNKRPRQASEVPDLGDTPLIAPTFWDAGLTQSDITQLGVMAESKRSESNAHMWHHNNMNSSNGISMNQRKASWLSSPSHLYLDTTDDSKSISASPISKTHSERLNNDHFLEQVDKEISKVEPATGCRLFGIDLIDHKKSNSLSVDNAPGVISEGRTDVNHESDISKASKEWKQEQLQVSPKENQNKQICSRSCTKVQMQGVAVGRAVDLTTLDGYDQLVDELEKMFDIKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVHKLSSGSKLPISSVEEIVISSDTTET* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01961 662 SUPERFAMILY CAD & PB1 domains 555 628 - -
Lapu1g01961 662 Gene3D - 548 640 - -
Lapu1g01961 662 Pfam Auxin response factor 242 323 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lapu1g01961 662 FunFam Auxin response factor 114 218 - -
Lapu1g01961 662 FunFam Auxin response factor 547 640 - -
Lapu1g01961 662 Pfam AUX/IAA family 531 639 IPR033389 -
Lapu1g01961 662 CDD B3_DNA 114 216 IPR003340 GO:0003677
Lapu1g01961 662 FunFam Auxin response factor 277 350 - -
Lapu1g01961 662 ProSiteProfiles PB1 domain profile. 552 633 IPR000270 GO:0005515
Lapu1g01961 662 Gene3D - 113 217 IPR015300 -
Lapu1g01961 662 SMART B3_2 116 218 IPR003340 GO:0003677
Lapu1g01961 662 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Lapu1g01961 662 SUPERFAMILY DNA-binding pseudobarrel domain 107 245 IPR015300 -
Lapu1g01961 662 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 640 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lapu1g01961 662 Pfam B3 DNA binding domain 116 216 IPR003340 GO:0003677
Lapu1g01961 662 Gene3D - 277 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01961 Lapu-Chr1 33019166 33024343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01961 4 645 B3 DNA Binding Superfamily AT4G23980 58.118 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lapu1g01961 AUX_IAA 4.9e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01961 K14486 - gmx:100799088 1132.47