Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01951 ATGTCTTGCTATTTCCCCTTCACTTGCCAAAGAAAGATGGAGTTCAACACCCAAAACTATAAAAAATCTGAGATAAGGTGGAGCTCAGATGATCAAGGTGGTCCTGGACAAGTGAAATCTTATTCTTGTTCCTTCTGCAAGAGAGGATTCTCTAATGCACAGGCCCTAGGTGGCCACATGAATATCCACAGAAGAGATAGGGCCAGGCTCAAGCAATCTTCTGAAGAAAGTTTGCTTTCGTTGGACATCTCAATCAAGACCACAAGCGATCACAATAATGACCCTTCTGATTTGGAAGAGAAAATTTTGTTTCGGTTAGGTTCTGGAGAAAATCAGAAGCATGCTAGAAATCATAAAATGCCATTCAATTTGCCTCACAAAGATGATCATGATTATGCACCAGAAAGGGGCATGTTGATTGGTACAGCAGAAATTCCTCATCTTCCTTCTTTTGTTTTGGGGCAGCGAATTGAAGAGAAGAAAGCTGATCTGGACCTAGAACTTAGGTTAGGCCTTCATCCCCAGGAGTCAGCAACATTGAACACTAGATCTTTCTTTTGA 561 0.4153 MSCYFPFTCQRKMEFNTQNYKKSEIRWSSDDQGGPGQVKSYSCSFCKRGFSNAQALGGHMNIHRRDRARLKQSSEESLLSLDISIKTTSDHNNDPSDLEEKILFRLGSGENQKHARNHKMPFNLPHKDDHDYAPERGMLIGTAEIPHLPSFVLGQRIEEKKADLDLELRLGLHPQESATLNTRSFF* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01951 186 Gene3D Classic Zinc Finger 12 96 - -
Lapu1g01951 186 PANTHER OS07G0101800 PROTEIN 21 174 - -
Lapu1g01951 186 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Lapu1g01951 186 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Lapu1g01951 186 SUPERFAMILY beta-beta-alpha zinc fingers 39 67 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01951 Lapu-Chr1 32901705 32902268 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01951 37 179 C2H2 Transcription Factor Family AT3G53820 38.462 1.48e-18 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu1g01951 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01951 - - ccaj:109793777 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01951 1 32901705 32902268 Lapu1g01951 1 32901705 32902268 ECH