Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu1g01950 | ATGGAGGAGGGTCAATGTTTGATCAGGAGTAAGAGAAAGTACTCTATGAGCTCTAGTCTTGATGATTCTTCTACTAATTACCCTTCCTATGATGACCACTCATGGGAAGAACAAGCCTTTGCTAAAGATGCAGCTTGGTCTGGTTGCGCGTGGCCACCGCGATCATATTCTTGTACCTTTTGCACAAGGGAATTTAGGTCAGCACAGGCTTTAGGAGGCCATATGAATGTTCATAGAAGAGATAGAGCAAGACTAAAGCAGCCCTATAGCCCTCAGAATGAAATCCTCAATGAGGATCTTGAGAAAACCCAACCCCAGAGTTCGGTTCAAATTTCTTTTACTTCATTGGGTTACTTATCCCCACCTTCTCTTAGTGGATTGGCTCATAACACTAACCCTAATTCTGATACTTATTCTCATGTTGTTGCTTCACCTTCCAAAGTTTTAGCCACATCAGTTAACAAGAGATGCAGAGAGAAACCCCAGATTCCACTTTACAATAATTCTTCAATTTTCAAAGGACGTCATGAGTCTTCCCCTTCTCTTTCTTCTAAATCCTGGTCAAATTTATTTGATGACTTCAGATTTTGTTCAAGTAGGCTCGATCCTGAAGCTAGTGTTGAGAAAAATTTGCTGGGATTCGGTTCTGGTTGTAGGAGTGAGGGTGATAAGGGTAAACCTGAGGTGACTGTGAGCATGAACTTGTTTATGAGTCGAGCTCACCCACTTGTGCAGTTTGAGAATAAAGAGACAGATACAAGTTTCAAGAAGAGAAAGTCAGAAGCTTCATCCATTCCATTCTTCCCCAAATCATGTTCAGTTGACAAGCATCATGTGCAGTCACAGATGTTTGATTTTAGCCCTAGCTCCATAGAAGAGCTAGATCTGGAGCTAAGGCTTGGTTACAGGTCCGAGGTATAG | 921 | 0.4202 | MEEGQCLIRSKRKYSMSSSLDDSSTNYPSYDDHSWEEQAFAKDAAWSGCAWPPRSYSCTFCTREFRSAQALGGHMNVHRRDRARLKQPYSPQNEILNEDLEKTQPQSSVQISFTSLGYLSPPSLSGLAHNTNPNSDTYSHVVASPSKVLATSVNKRCREKPQIPLYNNSSIFKGRHESSPSLSSKSWSNLFDDFRFCSSRLDPEASVEKNLLGFGSGCRSEGDKGKPEVTVSMNLFMSRAHPLVQFENKETDTSFKKRKSEASSIPFFPKSCSVDKHHVQSQMFDFSPSSIEELDLELRLGYRSEV* | 307 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu1g01950 | 306 | MobiDBLite | consensus disorder prediction | 9 | 29 | - | - | |
Lapu1g01950 | 306 | SUPERFAMILY | beta-beta-alpha zinc fingers | 53 | 82 | IPR036236 | - | |
Lapu1g01950 | 306 | Gene3D | Classic Zinc Finger | 51 | 112 | - | - | |
Lapu1g01950 | 306 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 56 | 83 | IPR013087 | - | |
Lapu1g01950 | 306 | Pfam | C2H2-type zinc finger | 56 | 80 | - | - | |
Lapu1g01950 | 306 | PANTHER | OS07G0101800 PROTEIN | 29 | 303 | - | - | |
Lapu1g01950 | 306 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 58 | 78 | IPR013087 | - | |
Lapu1g01950 | 306 | SMART | c2h2final6 | 56 | 78 | IPR013087 | - | |
Lapu1g01950 | 306 | MobiDBLite | consensus disorder prediction | 11 | 29 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu1g01950 | Lapu-Chr1 | 32893715 | 32894635 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu1g01950 | 1 | 87 | C2H2 Transcription Factor Family | AT5G06070 | 53.333 | 1.50e-24 | 97.4 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Lapu1g01950 | zf-C2H2_6 | 1.6e-05 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lapu1g01950 | - | - | vra:106758996 | 523.472 |