Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01950 ATGGAGGAGGGTCAATGTTTGATCAGGAGTAAGAGAAAGTACTCTATGAGCTCTAGTCTTGATGATTCTTCTACTAATTACCCTTCCTATGATGACCACTCATGGGAAGAACAAGCCTTTGCTAAAGATGCAGCTTGGTCTGGTTGCGCGTGGCCACCGCGATCATATTCTTGTACCTTTTGCACAAGGGAATTTAGGTCAGCACAGGCTTTAGGAGGCCATATGAATGTTCATAGAAGAGATAGAGCAAGACTAAAGCAGCCCTATAGCCCTCAGAATGAAATCCTCAATGAGGATCTTGAGAAAACCCAACCCCAGAGTTCGGTTCAAATTTCTTTTACTTCATTGGGTTACTTATCCCCACCTTCTCTTAGTGGATTGGCTCATAACACTAACCCTAATTCTGATACTTATTCTCATGTTGTTGCTTCACCTTCCAAAGTTTTAGCCACATCAGTTAACAAGAGATGCAGAGAGAAACCCCAGATTCCACTTTACAATAATTCTTCAATTTTCAAAGGACGTCATGAGTCTTCCCCTTCTCTTTCTTCTAAATCCTGGTCAAATTTATTTGATGACTTCAGATTTTGTTCAAGTAGGCTCGATCCTGAAGCTAGTGTTGAGAAAAATTTGCTGGGATTCGGTTCTGGTTGTAGGAGTGAGGGTGATAAGGGTAAACCTGAGGTGACTGTGAGCATGAACTTGTTTATGAGTCGAGCTCACCCACTTGTGCAGTTTGAGAATAAAGAGACAGATACAAGTTTCAAGAAGAGAAAGTCAGAAGCTTCATCCATTCCATTCTTCCCCAAATCATGTTCAGTTGACAAGCATCATGTGCAGTCACAGATGTTTGATTTTAGCCCTAGCTCCATAGAAGAGCTAGATCTGGAGCTAAGGCTTGGTTACAGGTCCGAGGTATAG 921 0.4202 MEEGQCLIRSKRKYSMSSSLDDSSTNYPSYDDHSWEEQAFAKDAAWSGCAWPPRSYSCTFCTREFRSAQALGGHMNVHRRDRARLKQPYSPQNEILNEDLEKTQPQSSVQISFTSLGYLSPPSLSGLAHNTNPNSDTYSHVVASPSKVLATSVNKRCREKPQIPLYNNSSIFKGRHESSPSLSSKSWSNLFDDFRFCSSRLDPEASVEKNLLGFGSGCRSEGDKGKPEVTVSMNLFMSRAHPLVQFENKETDTSFKKRKSEASSIPFFPKSCSVDKHHVQSQMFDFSPSSIEELDLELRLGYRSEV* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01950 306 MobiDBLite consensus disorder prediction 9 29 - -
Lapu1g01950 306 SUPERFAMILY beta-beta-alpha zinc fingers 53 82 IPR036236 -
Lapu1g01950 306 Gene3D Classic Zinc Finger 51 112 - -
Lapu1g01950 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Lapu1g01950 306 Pfam C2H2-type zinc finger 56 80 - -
Lapu1g01950 306 PANTHER OS07G0101800 PROTEIN 29 303 - -
Lapu1g01950 306 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Lapu1g01950 306 SMART c2h2final6 56 78 IPR013087 -
Lapu1g01950 306 MobiDBLite consensus disorder prediction 11 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01950 Lapu-Chr1 32893715 32894635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01950 1 87 C2H2 Transcription Factor Family AT5G06070 53.333 1.50e-24 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu1g01950 zf-C2H2_6 1.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01950 - - vra:106758996 523.472