Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01938 ATGGTTCCGTTAAGCACTTTCATGGACCAACCTAACATTATTACAATGTTAATATTCACAACCATGGCATTGTTGCTATCACGCGCCGAGGCTATGCGAAAGTGCGGGAATTGCGGTCCGAACCCGGTTCCTTACCCATTAAGCACGGGACCCGATTGTGGCGACCCGTGGTATAAGATCCGGTGCACCGCGGGTACACTCTGGTTTGATGCACTCGCCGGATCTTCTTACGCGATCAGGTCCATTGACCCGCTCACCCGTCGGATCATAACCCGACCAGCCACGCTGGCTCCAAAGACCTGCGTGTCCACGGACTTCCGCAGCGAAGGCATGCACCTGAACGAGACCCTTCCTTTTAGCGTCGCTACCGGGAACACCGTTTTTCTCTTCAACTGCACCGCCCACGCGCTTTTGATGAACTGCTCCGCAAGCAGCACGTGCCACAGCTACATTAAGGAGCACGCAGATTTTGGCGCGTGCGGGAGCGTGGGGTCGTGCTGCGAGTACCGGGGCGGTGGAGCCCGCAAAGAGTATGCGATTCGCTTGCACGGCGGAGAGTGCTCGGCGTACGAGAGTTTTGTAGATTTTAACGGGACGGCGGCGACTGTGGGGAAGCGGTGGCCGGAGGGTGGGGTGGGGATCGAGTGGGTGGCACCACAGGAACCTGTTTGTAAGGAGCCAATTGATTGCAAGGAATTGTTGAACTCGAAATGTGGAGTGGGTCCCAGTGGTGGGATGCAAAGGTGCTTCTGCAATGCTGGGTTTAAGTGGGACCCCATCAACGGTTCGTGTCAACCACAAACTGAGATACACAATACAAAGTGCATAGGACATGGAAAAGACAGCCACTGCAAAGTTCGGAAGAAAAAGAAAATGCTTGTGGCTGTGGTTGTTTCCATAGGAGGAATAGTCTTTGTCATAACAGTCATAGGAGTCATTTTGTACAAGAAGCAGAACCAAGCAAAAGGAAAAGTAAAGGAGGCTAAAATCAGTAAGAGAAAAGAAGTCTCAAGTGTGAAAGCCAGTGCTTTATCATCCAGAATCTTCACTGGCAGAGAGATAAAAAAGGCAACCAACAATTTCTCCCGAGAAAACCTCATTGGCACTGGTGGCTTCGGTGAAGTCTTCAAAGGGACATTCGATGATGCAACCGTCTTTGCCATCAAGCGTGCTAAGCTTGGAAGCACCAAAGGCATTGATCAGATGCAAAACGAGGTTCGAATTCTGTGCCAAGTGAACCACAGAAGCTTGGTGAGACTCCTTGGTTGTTGCTTGGAACTAGAACACCCTTTGCTTATATACGAGTACGTTTCAAATGGGACCCTTTTTGATTACCTTCATCGCCACTCTTGTGGCACAAGGGAAACCCTCAAATTGCACCAAAGACTCAAAATTGCACACCAAACAGCTGAAGGGCTTTCATATCTGCATTCTTCAGCTGTGCCACCCATTTACCACCGTGACGTGAAATCAAGCAATATACTTCTTGATGACAAGCTTGATGCCAAGGTTTCTGACTTTGGCTTATCAAGGCTCGTCGAATTGGCTGAAGAAAACAAGAGCCATATCTTCACTAGTGCTCAAGGGACACTAGGGTACCTAGATCCTGAGTACTATCGTAACTTTCAGTTGACGGATAAGAGTGACGTTTATAGCTTTGGAGTGGTGCTGATGGAGTTGCTCACTGCTCAGAAAGCCATTGATTTCAACAGGGAAGAAGAGAGCGTGAACTTGGCCATGTATGGAAAGAGGAAAATGGTTGAGGAGAAGTTGATGGATGTGGTTGATCCTTTGCTTAAAGAGGGAGCTAGTGATTTGGAATTGGAAACTATGAGGTCATTGGGGTATCTCGCAGTTTCATGCTTGGATGACCAGAGGCAAAAACGGCCTTCGATGAAAGAAGTTGCTGATGAGATTGAATACCTGGTTAAAGTTGTTAAAGGTCAAGTTTCCAAATCATGA 1962 0.4857 MVPLSTFMDQPNIITMLIFTTMALLLSRAEAMRKCGNCGPNPVPYPLSTGPDCGDPWYKIRCTAGTLWFDALAGSSYAIRSIDPLTRRIITRPATLAPKTCVSTDFRSEGMHLNETLPFSVATGNTVFLFNCTAHALLMNCSASSTCHSYIKEHADFGACGSVGSCCEYRGGGARKEYAIRLHGGECSAYESFVDFNGTAATVGKRWPEGGVGIEWVAPQEPVCKEPIDCKELLNSKCGVGPSGGMQRCFCNAGFKWDPINGSCQPQTEIHNTKCIGHGKDSHCKVRKKKKMLVAVVVSIGGIVFVITVIGVILYKKQNQAKGKVKEAKISKRKEVSSVKASALSSRIFTGREIKKATNNFSRENLIGTGGFGEVFKGTFDDATVFAIKRAKLGSTKGIDQMQNEVRILCQVNHRSLVRLLGCCLELEHPLLIYEYVSNGTLFDYLHRHSCGTRETLKLHQRLKIAHQTAEGLSYLHSSAVPPIYHRDVKSSNILLDDKLDAKVSDFGLSRLVELAEENKSHIFTSAQGTLGYLDPEYYRNFQLTDKSDVYSFGVVLMELLTAQKAIDFNREEESVNLAMYGKRKMVEEKLMDVVDPLLKEGASDLELETMRSLGYLAVSCLDDQRQKRPSMKEVADEIEYLVKVVKGQVSKS* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01938 653 SUPERFAMILY Protein kinase-like (PK-like) 335 638 IPR011009 -
Lapu1g01938 653 FunFam Wall-associated receptor kinase-like 20 437 652 - -
Lapu1g01938 653 ProSiteProfiles Protein kinase domain profile. 361 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01938 653 CDD STKc_IRAK 367 640 - -
Lapu1g01938 653 Pfam Protein kinase domain 362 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01938 653 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 333 436 - -
Lapu1g01938 653 Gene3D Transferase(Phosphotransferase) domain 1 437 651 - -
Lapu1g01938 653 Gene3D Phosphorylase Kinase; domain 1 319 436 - -
Lapu1g01938 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 484 496 IPR008271 GO:0004672|GO:0006468
Lapu1g01938 653 SMART serkin_6 361 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01938 653 ProSitePatterns Protein kinases ATP-binding region signature. 367 389 IPR017441 GO:0005524
Lapu1g01938 653 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 32 642 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01938 Lapu-Chr1 32739892 32743849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01938 34 653 Receptor kinase-like Gene Family AT5G02070 54.531 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Lapu1g01938 Pkinase 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01938 - - aprc:113862410 1030.78