Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01906 ATGGCCACCTTGCAGATGTCCCATGTTGATTTGGAGCAAGGAAACCATCGCCCTTCGGTTGTTGGAAGTGATGTGAGTGGTGAAGGGAGCTTATGCTTCTCTGATGCTGATGATGGTTCTTGCTACTCTCGTTTCTACTCAACAAATGGTGGTTCATATGATGATTACAGCTTTGCTTGTGTTTCTGATCCCGAGGCTGGGGGTATTCCTCATTCTGGGAGAGCTTCTTCTGTTTCTGAGTGTTCTGTGGAAGTGGAAACTAGAACTGGGGTTCCTGAGATCAAGGTGCATTTAGCTAAAGTGGAAAAAGATTGTAGGATTTGTCACATGGGTTTGGAGAGTGATAGCCATGAGTCCGGTGCCCCCATAGAATTGGGTTGTTCCTGTAAGGATGATTTGGCTGCTGCTCACAAGCACTGCGCTGAGGCCTGGTTCAAGATTAAGGGAAATAGGACTTGTGAAATTTGTCACTCTGTTGCTCGGAATGTTTATGGAGCAAACGAGGATTCGACGGAGCATGTTAGCGACGGTAACAATGCTACTACAGCAGCAGCCACACTCTCCACACCTGCTCCTTCTGCTGAACCTCGAAGATTTTGGCACGGCCATCGCTTCCTGAATTTCTTGCTTGCTTGTATGGTTTTTGCATTTGTCATATCATGGCTTTTCCACTTTAATGTGCCATCATCGTAG 693 0.4661 MATLQMSHVDLEQGNHRPSVVGSDVSGEGSLCFSDADDGSCYSRFYSTNGGSYDDYSFACVSDPEAGGIPHSGRASSVSECSVEVETRTGVPEIKVHLAKVEKDCRICHMGLESDSHESGAPIELGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHSVARNVYGANEDSTEHVSDGNNATTAAATLSTPAPSAEPRRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01906 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 166 IPR013083 -
Lapu1g01906 230 ProSiteProfiles Zinc finger RING-CH-type profile. 97 163 IPR011016 GO:0008270
Lapu1g01906 230 Pfam RING-variant domain 105 156 IPR011016 GO:0008270
Lapu1g01906 230 MobiDBLite consensus disorder prediction 1 22 - -
Lapu1g01906 230 PANTHER ZINC FINGER, RING-CH-TYPE 21 229 - -
Lapu1g01906 230 CDD RING_CH-C4HC3_MARCH 105 157 - -
Lapu1g01906 230 SMART ringv_2 104 157 IPR011016 GO:0008270
Lapu1g01906 230 SUPERFAMILY RING/U-box 102 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01906 Lapu-Chr1 32308216 32311650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01906 74 230 C3H Transcription Factor Family AT5G05830 62.658 5.49e-67 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01906 - - gmx:100808666 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01906 1 32308216 32311650 Lapu1g01906 1 32308216 32311650 ECH