Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01882 ATGCTTCAGATTCGGCTTAGTAGGGCTCCTGCATCAGAGGGGTCAGCTGGGGTGAAGCAGTCTCCTGTTGAGAATGTTACAGTTGCGTGCCCTGACCATCTGGTTCTTGCTGATCTTCCTGTTGCAAAGGGCATTGGTGCAGCCACGGCTGCTTCTCTTGTGAAGACTTTGGGCCGTAGGTCCCGCCGCCAGCTTGGCGAGCGAGTCCATTTTTGTGTTCGCTGCGATTTCCCTGTCGCCATTTACGGACGCCTGAGCCCTTGTGAGCATGCCTTTTGTCTGGATTGTTCTAGAAGTGATTCGATGTGCTACCTGTGTGATGAACGAATCCAGAAGATTCAAACAATCAAAATGATGGAAGGAATCCTCATTTGTGCTGCTCCTCATTGTCTCAAATCCTTCTTAAAGAAAGCCGATTTTGAATCTCATATCCAAGACAGCCATGCCAACCTTCTTCGACCCAATGCTGATAAAGAAGATGGAAATGAGTCAGAGGCACAGAGTGTTAGGCAATCTACGGCTTCAGATTCCACTGCTAGAGGTCCCCAAAGACCAGTTTTTTCTCCTGGTTCAAATTCCCAGCAACATGATCTGGAAGACAAATCTCGTAGACAGACACCTAGAGAGCAACCACCTTCAAGGCAAACCCTGCAGCCAAAGCCACCATATTATGGTCAACAGCACCCTTCAGATACCTTGTCTGGCTCTGTTGGAGGTGGACAACAGGGCTTTCATCAACAAAGTTTTGACATGCAGCAACCCCCACAAGAACCTTCCCAGTTTTCTGACAGGCAACAAGCAGTGGGTTCAGAGACCCCATTTCCTGAGTATCCTACAATGCACCCTGCACAACCTTCGAATGTTCCCTCCCTGGTTACTTCAAACCCAATGCTGAACCCTCCTGTGCCATTTGGATACCCCCCGTACCCAAACGAACGAGCCCAACCATTTTATGCTGCTCCCTATGATATGCCTAGGCAGGACTCAGGTCCTGATATAGGTGGAGACCAGAGTTCATTATTGGGTTTCCCACAAGGTGCCCCAAATGGCCCAAATTTTCCAGGAAATTATCCCCTGCCCTGGAATTCAGGAATTGGTGGTGTGCCTTTTGAACAAACACAGGGTGGTATGGTTGTGGATTCGAGGGAGGGCAAGGGTATACTGGCACCGCAGCCCATGCCCCTCCCACCACCACCGCCGCCTCCACCCAACATGTCACATTTAAAACAGAACTACTATTCTGGGGAGCTTGGACATGATGGTCAGGGTTATGGGTGGCAGCATGATAACCGTGATAGCTTTGGTAGCCAGGGCTAG 1317 0.4996 MLQIRLSRAPASEGSAGVKQSPVENVTVACPDHLVLADLPVAKGIGAATAASLVKTLGRRSRRQLGERVHFCVRCDFPVAIYGRLSPCEHAFCLDCSRSDSMCYLCDERIQKIQTIKMMEGILICAAPHCLKSFLKKADFESHIQDSHANLLRPNADKEDGNESEAQSVRQSTASDSTARGPQRPVFSPGSNSQQHDLEDKSRRQTPREQPPSRQTLQPKPPYYGQQHPSDTLSGSVGGGQQGFHQQSFDMQQPPQEPSQFSDRQQAVGSETPFPEYPTMHPAQPSNVPSLVTSNPMLNPPVPFGYPPYPNERAQPFYAAPYDMPRQDSGPDIGGDQSSLLGFPQGAPNGPNFPGNYPLPWNSGIGGVPFEQTQGGMVVDSREGKGILAPQPMPLPPPPPPPPNMSHLKQNYYSGELGHDGQGYGWQHDNRDSFGSQG* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01882 438 MobiDBLite consensus disorder prediction 153 308 - -
Lapu1g01882 438 CDD RING-HC_HAKAI-like 70 119 IPR040380 -
Lapu1g01882 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
Lapu1g01882 438 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 428 IPR040383 GO:0016567|GO:0061630
Lapu1g01882 438 MobiDBLite consensus disorder prediction 209 269 - -
Lapu1g01882 438 MobiDBLite consensus disorder prediction 321 358 - -
Lapu1g01882 438 MobiDBLite consensus disorder prediction 386 438 - -
Lapu1g01882 438 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Lapu1g01882 438 FunFam E3 ubiquitin-protein ligase Hakai 69 123 - -
Lapu1g01882 438 MobiDBLite consensus disorder prediction 390 406 - -
Lapu1g01882 438 MobiDBLite consensus disorder prediction 166 195 - -
Lapu1g01882 438 MobiDBLite consensus disorder prediction 283 297 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01882 1 437 C2H2 Transcription Factor Family AT5G01160 45.575 1.51e-111 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01882 K15685 - gmx:100817582 808.52