Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01878 ATGATAGTTGCTGTGGATTTGAATGCCTCGCCTGTGCCCGAGGATGATGAAAATGATTTTGGGGGCCAGGTCGAAGAGTACCATACACCAGAAGAGCGTGTGGAAACTGCAGTTGATATTGCTCGCCGGGAACGTGAAGAAAGAAAGAGAAGGTTGAAAAGGGAACGCTCAGATGACAAACCACTGCAAGTATCACAGTCACATGGACATGATCAGCTATTTCATACTAAAATCCTTAAATCATATGATAGAACTAAGCTCCCTCCAGGTTGGTTGGATTGCCCTTCATTTGGCCAGGAAATTTATTGTATGATACCTTCCAAGGTCCCACTTGGTGAATCATTCAATGACTACATCATTCCTGGTAAAAGATACTCATTTAAACAAGTGATACATCAACAGAGAGTTTTAGGGAGAAAACTTGGTCTCGTAATTGATTTGACAAATACTTCTAGATACTATCCAGTAGCAGATTTAAAGAAAGATGGTATCAAACATGTTAAGATTCAATGCAAGGGCCACAATTCTGTACCTGATAATTTATCTGTTAATAATTTTGTCTACGAGGTTACGCAATTTCTATTACGTCAAAAACACTCGAGGAAGTATACACTTGTTCATTGTACACATGGTCATAATCGTACAGGATACATGATCATCCATTATCTGATGCGCTCAATGTCAATGTCTGTTACTCAGGCAATAAAAATATTTTCTGAAGCACGCCCTCCAGGAATCTACAAACCTGAGTACATTGATGCATTGTATGCTTTTTATCATGAAAAAAAGCCTGAAATGATAGTTTGTCCTCCTACCCCTGAGTGGAAGAGAACTCCTGAACTTGTTGATCTCAACGGTGAAGCAGTACCAGATGATGACGATGATGATGGAGTACCTGGCTCTCCTTTGCATGGGATTCCCGAGACTGACACAATAATGACAAATGATGATGTGTTGGGAGATGACATACCTAATGATCAGCAAGATGCGTTTCGTCAGTTCTGTTTTCAAACTCTTAGACTTGGTGTTTGGGCCAGAGGGCACATGCAATTTCCAGGCTCACACCCAGTTTCTTTAGACAGAGAAAATTTACAACTGTTACGACAACGTTATTATTATGCAACATGGAAAGCTGATGGAACAAGATATATGATGCTAATAACTGTGGATGGATGTTACTTGATTGATAGAAGCTTCAATTTTCGAAGGGTCCAAATGAGGTTTCCCTGCAGGATTACAATTGATGGCGTGGCTGAGAAGACGCACCACTTCACATTACTTGATGGAGAGATGATTATTGATACATTGCCAGATTCAAAAAAGCAGGAAAGGAGATACCTCATATATGATCTGATGGCAGTCAATGGAGTATCAGTAATAGAGCGACCATTTTATGAACGGTGGAAGATGCTTGAGAAAGAAGTGATTGAACCCAGGAATCAGGAACGGTTCCAGAGCAGAAATCCTTATTATAGATATGACATGGAGCCATTCCGGGTGAGGAGAAAAGATTTTTGGTTGCTCTCTACTGTCACAAAGCTTTTAAACGAATTCATTCCCAAACTTTCACATGATGCAGATGGTCTCGTATTTCAGGGCTGGGATGATCCTTACATACCTCGCACTCATGAAGGCCTCTTAAAGTGGAAATATGCTGATCTGAATTCAGTTGATTTTCTTTTTGAGATTGAGAATGATTGTCAGCTACTTTTTCTATATGAACGTGGAAAAAAGAAACTCATGGAAGGGTATAGGGTTGCATTCGAAGAAGGTTCGGATCCCTTGCATTTTTCTGGAAAGATCATTGAGTGTTCTTGGGATTCTGATAGACAAGAATGGCTTTACAAGCGAATCAGAGCAGATAAATCAACTCCGAATGACTTTAATACATATAGAAAGGTGATGCGAAGTATAAGAGACAATATCACAGAGGATATCCTATTGAATGAAATAAATGAGATAATTCGCCTTCCCATGTATGCGGACAGGATAAGAACTGATAGCAAAGCCAATCACCACGCCAACATGGCTCGAAGAAGGTAA 2043 0.3999 MIVAVDLNASPVPEDDENDFGGQVEEYHTPEERVETAVDIARREREERKRRLKRERSDDKPLQVSQSHGHDQLFHTKILKSYDRTKLPPGWLDCPSFGQEIYCMIPSKVPLGESFNDYIIPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVADLKKDGIKHVKIQCKGHNSVPDNLSVNNFVYEVTQFLLRQKHSRKYTLVHCTHGHNRTGYMIIHYLMRSMSMSVTQAIKIFSEARPPGIYKPEYIDALYAFYHEKKPEMIVCPPTPEWKRTPELVDLNGEAVPDDDDDDGVPGSPLHGIPETDTIMTNDDVLGDDIPNDQQDAFRQFCFQTLRLGVWARGHMQFPGSHPVSLDRENLQLLRQRYYYATWKADGTRYMMLITVDGCYLIDRSFNFRRVQMRFPCRITIDGVAEKTHHFTLLDGEMIIDTLPDSKKQERRYLIYDLMAVNGVSVIERPFYERWKMLEKEVIEPRNQERFQSRNPYYRYDMEPFRVRRKDFWLLSTVTKLLNEFIPKLSHDADGLVFQGWDDPYIPRTHEGLLKWKYADLNSVDFLFEIENDCQLLFLYERGKKKLMEGYRVAFEEGSDPLHFSGKIIECSWDSDRQEWLYKRIRADKSTPNDFNTYRKVMRSIRDNITEDILLNEINEIIRLPMYADRIRTDSKANHHANMARRR* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01878 680 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 86 276 IPR029021 -
Lapu1g01878 680 FunFam mRNA capping enzyme family protein 83 298 - -
Lapu1g01878 680 Gene3D Protein tyrosine phosphatase superfamily 63 280 IPR029021 -
Lapu1g01878 680 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 184 253 IPR000387 GO:0016311|GO:0016791
Lapu1g01878 680 ProSitePatterns Tyrosine specific protein phosphatases active site. 206 216 IPR016130 GO:0016311|GO:0016791
Lapu1g01878 680 MobiDBLite consensus disorder prediction 1 68 - -
Lapu1g01878 680 MobiDBLite consensus disorder prediction 22 65 - -
Lapu1g01878 680 PANTHER MRNA-CAPPING ENZYME 82 662 - -
Lapu1g01878 680 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 314 551 - -
Lapu1g01878 680 PIRSF mRNA_capping_HCE 74 680 IPR017074 GO:0004484|GO:0006370|GO:0140818
Lapu1g01878 680 Gene3D DNA ligase/mRNA capping enzyme 314 548 - -
Lapu1g01878 680 Pfam Dual specificity phosphatase, catalytic domain 139 259 IPR000340 GO:0008138|GO:0016311
Lapu1g01878 680 SUPERFAMILY Nucleic acid-binding proteins 553 665 IPR012340 -
Lapu1g01878 680 ProSiteProfiles ATP-dependent DNA ligase family profile. 437 578 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lapu1g01878 680 Pfam mRNA capping enzyme, C-terminal domain 555 647 IPR013846 -
Lapu1g01878 680 Gene3D - 549 657 IPR012340 -
Lapu1g01878 680 MobiDBLite consensus disorder prediction 287 317 - -
Lapu1g01878 680 FunFam mRNA-capping enzyme 572 665 - -
Lapu1g01878 680 CDD Adenylation_mRNA_capping 346 551 IPR001339 GO:0004484|GO:0005524|GO:0006370
Lapu1g01878 680 ProSiteProfiles Dual specificity protein phosphatase domain profile. 109 265 IPR020422 GO:0006470|GO:0008138
Lapu1g01878 680 SMART dsp_5 119 261 IPR020422 GO:0006470|GO:0008138
Lapu1g01878 680 Pfam mRNA capping enzyme, catalytic domain 355 550 IPR001339 GO:0004484|GO:0005524|GO:0006370
Lapu1g01878 680 Coils Coil 38 58 - -
Lapu1g01878 680 FunFam mRNA capping enzyme, putative 314 548 - -
Lapu1g01878 680 CDD RNA_5'-triphosphatase 90 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01878 Lapu-Chr1 31983704 32002765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01878 1 680 Protein tyrosine phosphatase (PTP) family AT3G09100 67.299 0.0 927
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01878 K13917 - gmx:100803597 1308.51