Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01861 ATGATGTACTGTGACGCCTCCGATGGGCTCGTGAACTTCTGGGAGCGCGAGAAGGGCTACGCGCACGGCAGAGTCCTCAAGGGGCACAAGCTCGTTGTGCTGTGTCTCATCGCCACGGGGACAGAAGACTACAACATCTCCTACAAGGGTTCCAAGATTCCTCGCCCCATGAGGAGTTGGATCGAGAGCAAGTTGAGCCTGGAGCTCTTGAAGGCTGTGGAGAAGGCTAGCTATAAAACCCCTTCTCCGATTCAGATGGCAGCCATTCCCCTTGGCTTGCAGCAGCGTGATGTCATTGGCATTGCCGAGACTGGTTCCAGGAAAACCGCGGCGTTTGTGCTTCCCATGTTGAGCTACATCACCAGGCTTCCTCCCATGAGCGAGGACAACGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCCCCCACTCGCGAGCTCGCGCAGCAGATCGAGGATGAGACTGTTAAGTTTGTGCAGGTATTTGGGCATCAAGGTGGTGTCCATTGTTGGTGGACAATCCATTGA 525 0.5543 MMYCDASDGLVNFWEREKGYAHGRVLKGHKLVVLCLIATGTEDYNISYKGSKIPRPMRSWIESKLSLELLKAVEKASYKTPSPIQMAAIPLGLQQRDVIGIAETGSRKTAAFVLPMLSYITRLPPMSEDNEAEGPYAVVMAPTRELAQQIEDETVKFVQVFGHQGGVHCWWTIH* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01861 174 Gene3D - 37 170 IPR027417 -
Lapu1g01861 174 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 58 86 IPR014014 GO:0003724
Lapu1g01861 174 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 162 IPR027417 -
Lapu1g01861 174 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 89 153 IPR014001 -
Lapu1g01861 174 Pfam DEAD/DEAH box helicase 83 160 IPR011545 GO:0003676|GO:0005524
Lapu1g01861 174 PANTHER RNA HELICASE 54 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01861 Lapu-Chr1 31754920 31755598 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01861 65 157 Eukaryotic Initiation Factors Gene Family AT5G11200 38.710 1.62e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01861 K12858 - gmx:100799264 221.09