Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01860 ATGAGTAATAACTCCTTGAATGGAAGTATTCCTCTCCAAGTTGGGGTATTGTACAAACTCACTCATCTTGATTTAAGTGACAATCATCTTACTGGACTGATCCCTTCTGAAATAACTAAGTTAGTCAGTCTTCACAGTTTGTATTTACAAAATAATGTTTTTAATTGTTCTATTCTTGAAGAAATAGGTGCATTATGGAATTTGAGAGAGATTGTCATTCACTTTGCCAATCTCACAGGGTCTATTCCAAAATCTATAGGAAATTTGACCAGTCTCTTATTTCTAGATTTGTCGCATAACAACCTTTATGGACATATTCCTCACGAAATTGGGAATTTGTCAAACTTAGAGACTTTGGTGCTTGGAAATAATTTCTTACATGGTTCTATTCCTCAAGAAATAGGTAAGCTACAGAACCTCGAGGGTTTATATATAAATACAAACAATTTATCTGGCAATATTCCTGTGGGAATTGGGAAGTTGGTCAACTTGACAGAGTTATGGCTTTTCGAAAATAATCTTTCGGGTTCTATTCCTCAAGAAATTGGAATGATCACACATTTACTTCAACTTGATTTGTCCGATAACTTTTTGTCAGGAACAATCCCCCCTACAATTGGAAACCTGAGCAATTTACTCTATTTCCACATGTATTCCAACCATCTATCTGGATCTATTCCTAATGAAGTGGGAAAACTCCATTTTCTTCGGACGATCAAATTGTTATACAATAATCTTTCTGGCCCAATCCCATCTTCCATCGGTAACTTGGTCAATTTGGACTCTATTCTTCTTAATGGAAACAAACTCTCTGAATCAATTCCTTCAACTATTGGTAACTTGACAAAGCTCAGGAGACTTGTTTTAATCTCAAATAAACTTAGTGGATACATTCCAAAAGAAATGAATATGCTTAACAACCTGGACACATTGCATATATCTGATAATAATTTCATTGGTCATTTGCCCCACAATGTTTGCACTAGTGGAAAGTTGAAATGTTTAGTTGCTGAGAATAACTATTTCACGGGTGCACTACCTATGAGTTTGAAGAATTGCTCTACCCTTATAAGAGTTACACTTCAACAAAACCATTTGACAGGAAATATAACAGATGATTTTGGTGTATATCCAAACTTGGATTACGTAGACCTGAGTGAAAATAACTTTTATGGTCACCTTTCTCCAAAATGGGGAAAATGTCGTAACCTCACATGCCTCAAAATGTCCAACAACAATTTATCAGGAAGCATTCCACCAGAAATAAGTCAGGCAACCAAATTACAAGTACTTCAATTGTCTTCAAATCATCTCGTAGGAGGCATTCCCAAAGATTTAGCTAATTTGACCTGCTTGTTCAAACTCTCTCTCGATAATAATAATCTTTCAGGGAATGTTCCTATACAAATAACATCCTTACAAGATCTTGACACCTTAGAGCTCGGAGCAAATAGTTTTTCTGGCTTAATTCCAAATCAACTTGGCAATTTGGTGAAGTTATTACATTTGAATTTGAGCCAAAATAAATTGAGGGAAAATATTCCATCCGAGTTTGGTAAATTAAAATATATTGAAAGTCTTGATCTTAGCACGAATTTTTTGAGTGGAAAAATACCACCAGCGCTGGGAGAGTTGAAAAGCTTAGAAACATTAAATCTCTCGCACAATCAGCTTTCAGGCGATCTCTCCAGCCTTGATGAGATGAGAAGCCTGACATCTGTTGATATATCTTACAACCAATTACAGGGTCCACTTCCAAACATCTCAGCCTTCAATATGGCCACATTTGAAACATTGAGAAACAATAAAGGCTTGTGTGGTAATATCTCTGGCTTGGAACCATGTCCAACATCACGTAACAAATCTAAAAAGCGTAAGACTAACAGAGTTATATTGGTGTTTTTACCGATTGGTTTGGGCACTTTAATGCTAGCATTATTTGTCTTTGGAGTCTCTTATCATATTTGTCGAAGCTCAGAGACAAAAGAACATCCAGATACTGAATCTTTAGGCCAAAATCTTTTTACGATATGGAGTTTTGATGGAAAGATGGTGTATGAGAACATAATTGAAGCCACAGAAGACTTTGACGATAAACATCTAATTGGAGTTGGAGGACAAGGAAGTGTTTATAAAGCTGAATTGCCAAAAAATCAAATTGTTGCTGTTAAGAAACTCCATTCGGTACAAAATGGAGAAATGTCAAATATTAAAGCTTTCTCAAGTGAAATTCAAGCTTTGATAGAAATTCGACATCGTAACATTGTGAGGCTATATGGGTTTTGTTCTCATTCCCGATTCTCATTTTTGGTTTATGAGTTCTTGGAAATGGGAAGCATAGATAAGATTTTAAAAGATGATGAACAAGCAATTGCATTTAACTGGAATAGAAGGATTGATGCCATTAAAAGTGTAGCAGATGCTTTATGCTATATGCATCATGATTGTTCACCTCCAATTGTTCATCGAGATATATCAAGCAAGAATGTTCTTTTGAATTTGGAGTACGTGGCTCATGTATCAGATTTTGGAACAGCCAAGCTTCTTAATCCTAATTCAACCAATTGGACCTCATTTGTGGGAACTTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTCAATGAAAAATGCGATGTGTTTAGCTTTGGGGTACTAGCACTGGAAATACTTTTGGGAGAGCACCCTGGAGATTTTATGAATTCATTGTTGACATTTTCATCAAAAGTCAATAACTTAACACTTGATATTTCTTTATTGATGGGTAAGTTAGATCAACGTCTCCCATATCCTGCAAATCCCATTGCTAAGGAGATAGTTTTGATTATAAGGACAGCAAATGCTTGCTTGAATGAAAGCCCTCGTTCTCGCCCTACCATGGAACAAGTTGTTAACTACTCTTCAATGTAG 2916 0.3591 MSNNSLNGSIPLQVGVLYKLTHLDLSDNHLTGLIPSEITKLVSLHSLYLQNNVFNCSILEEIGALWNLREIVIHFANLTGSIPKSIGNLTSLLFLDLSHNNLYGHIPHEIGNLSNLETLVLGNNFLHGSIPQEIGKLQNLEGLYINTNNLSGNIPVGIGKLVNLTELWLFENNLSGSIPQEIGMITHLLQLDLSDNFLSGTIPPTIGNLSNLLYFHMYSNHLSGSIPNEVGKLHFLRTIKLLYNNLSGPIPSSIGNLVNLDSILLNGNKLSESIPSTIGNLTKLRRLVLISNKLSGYIPKEMNMLNNLDTLHISDNNFIGHLPHNVCTSGKLKCLVAENNYFTGALPMSLKNCSTLIRVTLQQNHLTGNITDDFGVYPNLDYVDLSENNFYGHLSPKWGKCRNLTCLKMSNNNLSGSIPPEISQATKLQVLQLSSNHLVGGIPKDLANLTCLFKLSLDNNNLSGNVPIQITSLQDLDTLELGANSFSGLIPNQLGNLVKLLHLNLSQNKLRENIPSEFGKLKYIESLDLSTNFLSGKIPPALGELKSLETLNLSHNQLSGDLSSLDEMRSLTSVDISYNQLQGPLPNISAFNMATFETLRNNKGLCGNISGLEPCPTSRNKSKKRKTNRVILVFLPIGLGTLMLALFVFGVSYHICRSSETKEHPDTESLGQNLFTIWSFDGKMVYENIIEATEDFDDKHLIGVGGQGSVYKAELPKNQIVAVKKLHSVQNGEMSNIKAFSSEIQALIEIRHRNIVRLYGFCSHSRFSFLVYEFLEMGSIDKILKDDEQAIAFNWNRRIDAIKSVADALCYMHHDCSPPIVHRDISSKNVLLNLEYVAHVSDFGTAKLLNPNSTNWTSFVGTFGYAAPELAYTMEVNEKCDVFSFGVLALEILLGEHPGDFMNSLLTFSSKVNNLTLDISLLMGKLDQRLPYPANPIAKEIVLIIRTANACLNESPRSRPTMEQVVNYSSM* 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01860 971 PRINTS Leucine-rich repeat signature 20 33 - -
Lapu1g01860 971 PRINTS Leucine-rich repeat signature 545 558 - -
Lapu1g01860 971 SUPERFAMILY L domain-like 339 607 - -
Lapu1g01860 971 ProSiteProfiles Leucine-rich repeat profile. 547 569 IPR001611 GO:0005515
Lapu1g01860 971 FunFam Calmodulin-binding receptor kinase CaMRLK 24 131 - -
Lapu1g01860 971 Gene3D Phosphorylase Kinase; domain 1 658 774 - -
Lapu1g01860 971 SUPERFAMILY RNI-like 2 295 - -
Lapu1g01860 971 FunFam Leucine-rich repeat receptor protein kinase EMS1 228 325 - -
Lapu1g01860 971 FunFam Uncharacterized protein 327 624 - -
Lapu1g01860 971 Pfam Leucine rich repeat 378 438 IPR001611 GO:0005515
Lapu1g01860 971 Pfam Leucine rich repeat 524 581 IPR001611 GO:0005515
Lapu1g01860 971 Pfam Leucine Rich Repeat 19 41 IPR001611 GO:0005515
Lapu1g01860 971 Gene3D Transferase(Phosphotransferase) domain 1 775 971 - -
Lapu1g01860 971 SMART LRR_typ_2 161 184 IPR003591 -
Lapu1g01860 971 SMART LRR_typ_2 257 281 IPR003591 -
Lapu1g01860 971 SMART LRR_typ_2 401 425 IPR003591 -
Lapu1g01860 971 SMART LRR_typ_2 305 329 IPR003591 -
Lapu1g01860 971 SMART LRR_typ_2 185 209 IPR003591 -
Lapu1g01860 971 SMART LRR_typ_2 545 568 IPR003591 -
Lapu1g01860 971 SMART LRR_typ_2 113 137 IPR003591 -
Lapu1g01860 971 SMART LRR_typ_2 89 112 IPR003591 -
Lapu1g01860 971 SMART LRR_typ_2 17 40 IPR003591 -
Lapu1g01860 971 SMART LRR_typ_2 497 521 IPR003591 -
Lapu1g01860 971 FunFam MDIS1-interacting receptor like kinase 2 775 971 - -
Lapu1g01860 971 PANTHER LEUCINE RICH REPEAT KINASE 2 254 967 - -
Lapu1g01860 971 SUPERFAMILY Protein kinase-like (PK-like) 680 968 IPR011009 -
Lapu1g01860 971 Gene3D Ribonuclease Inhibitor 328 624 IPR032675 -
Lapu1g01860 971 SMART LRR_sd22_2 257 283 - -
Lapu1g01860 971 SMART LRR_sd22_2 17 46 - -
Lapu1g01860 971 SMART LRR_sd22_2 185 211 - -
Lapu1g01860 971 SMART LRR_sd22_2 113 142 - -
Lapu1g01860 971 SMART LRR_sd22_2 497 529 - -
Lapu1g01860 971 SMART LRR_sd22_2 449 478 - -
Lapu1g01860 971 SMART LRR_sd22_2 545 567 - -
Lapu1g01860 971 ProSiteProfiles Protein kinase domain profile. 696 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01860 971 ProSiteProfiles Leucine-rich repeat profile. 19 40 IPR001611 GO:0005515
Lapu1g01860 971 Pfam Protein kinase domain 697 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01860 971 FunFam Leucine-rich repeat receptor protein kinase MSP1 658 774 - -
Lapu1g01860 971 Gene3D Ribonuclease Inhibitor 1 160 IPR032675 -
Lapu1g01860 971 Gene3D Ribonuclease Inhibitor 161 327 IPR032675 -
Lapu1g01860 971 FunFam Leucine-rich receptor-like protein kinase family protein 132 227 - -
Lapu1g01860 971 ProSitePatterns Tyrosine protein kinases specific active-site signature. 820 832 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01860 Lapu-Chr1 31723863 31726929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01860 64 868 Receptor kinase-like Gene Family AT4G08850 44.934 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lapu1g01860 Pkinase 8.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01860 - - gmx:100811066 1350.5