Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01858 ATGGACGGAAGAGATGAGGATGTGAGAGTAGGAGCCAACAGGTATGGAGAGAGGCAACCAATAGGAACAGGTGCACAGACACAAGATGGCAAAGACTACAGAGAGGCTCCCCCAGCTCCATTGTTTGAGCCTAGAGAGCTAACATCATGGTCTTTCTACAGAGCAGGGATAGCAGAATTTGTGGCCACATTCTTGTTTCTTTATGTCACTGTTTTGACTGTGATGGGTGTGGCAAAATCTCCCAACAAGTGCTCCACAGTTGGTGTCCAGGGCATTGCTTGGTCATTTGGTGGAATGATCTTTGCCCTTGTCTACTGCACTGCTGGTATCTCAGGGGGTCACATTAACCCAGCTGTGACATTTGCGTTGTTCTTGGCACGCAAGGTATCTCTGACTAGGACAGTGTTCTACATGATCATGCAGTGCTTAGGAGCTATATGTGGTGCTGCTGTTGTCAAGGGATTCCAATCAAAACAATATGAGAGGCTTGGTGGTGGTGCCAACACTCTCAGTAAAGGATACTCCAAAGGTGATGGCCTTGGAGCAGAAATTGTTGGCACATTTATTCTTGTTTACACTGTTTTCTCCGCCACAGATGCCAAACGAAATGCTAGAGACTCGCATGTTCCTATTTTGGCACCTTTGCCTATTGGTTTTGCGGTCTTTCTTGTGCACTTGGCTACAATTCCTATCACAGGGACTGGGATCAACCCTGCTAGAAGCTTAGGTGCGGCTCTTATATACAACAAGGACCAAGCTTGGAATAACCATTGGATATTCTGGGTTGGGCCTTTTATTGGGGCAGCACTTGCAGCTTTATACCATCAGATAGTGCTCAGGGCAATTCCTTTTAAATCAAAATGA 864 0.463 MDGRDEDVRVGANRYGERQPIGTGAQTQDGKDYREAPPAPLFEPRELTSWSFYRAGIAEFVATFLFLYVTVLTVMGVAKSPNKCSTVGVQGIAWSFGGMIFALVYCTAGISGGHINPAVTFALFLARKVSLTRTVFYMIMQCLGAICGAAVVKGFQSKQYERLGGGANTLSKGYSKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWNNHWIFWVGPFIGAALAALYHQIVLRAIPFKSK* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01858 287 NCBIfam MIP family channel protein 58 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu1g01858 287 MobiDBLite consensus disorder prediction 1 33 - -
Lapu1g01858 287 ProSitePatterns MIP family signature. 114 122 IPR022357 -
Lapu1g01858 287 FunFam Probable aquaporin PIP1-2 39 287 - -
Lapu1g01858 287 Gene3D Glycerol uptake facilitator protein. 39 286 IPR023271 -
Lapu1g01858 287 Pfam Major intrinsic protein 46 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu1g01858 287 SUPERFAMILY Aquaporin-like 45 279 IPR023271 -
Lapu1g01858 287 CDD MIP 54 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu1g01858 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 283 IPR034294 -
Lapu1g01858 287 PRINTS Major intrinsic protein family signature 133 152 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu1g01858 287 PRINTS Major intrinsic protein family signature 258 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu1g01858 287 PRINTS Major intrinsic protein family signature 218 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu1g01858 287 PRINTS Major intrinsic protein family signature 54 73 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu1g01858 287 PRINTS Major intrinsic protein family signature 96 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu1g01858 287 PRINTS Major intrinsic protein family signature 182 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01858 Lapu-Chr1 31706429 31708794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01858 1 287 Major Intrinsic Protein MIP AT3G61430 81.185 7.22e-173 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01858 K09872 - gmx:100809467 567.385