Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01850 ATGGACATGTTTTGTAAATGGCTTGGTGCTTTGAATTGTTTTGGAAGGAGGGATGATCCTGCAGACCAGCCACATGAACAAGTGGTTGCAACTAAAAAGTTTAGCTATAACTCATTGAGATCAGCAACAAAAGATTTTCATCCTTCAAGCAAAATTGGTGGAGGAGGTTATGGAGTTGTCTACAAGGGAGTTTTAAGGGATGGTACTCAGGTTGCTATCAAGTCTCTTTCTGCTGAGTCTAAACAAGGAACTCATGAATTTATGACAGAAATTGATATGATATCAAATATGCGACATCCTAATCTTGTGGAACTGATTGGCTGCTGTATTGAGGATAGTCACCGAATACTGGTTTATGAATTTATGGAGAACAATAGCCTTGCAAGCTCTTTGCTTGGTTCAAAAGGTAAATATGTTGCTCTGGATTGGCCAAAGAGGGCTGCTATTTGTCGTGGCACAGCTTCTGGTCTATGTTTTCTTCACGAAGAGGCTCAACCAAACATTGTTCACAGGGATATCAAGGCCAGTAACATATTGTTGGATGGGAACTTTAATCCGAAAATTGGTGATTTTGGTCTTGCAAAACTTTTTCCTGACAATGTCACCCATGTTAGTACTCGAGTTGCAGGAACTGTGGGATATCTTGCACCGGAATATGCACTTCTGGGACAACTTACAAAGAAGGCAGACGTTTACAGTTTTGGGATTCTCATGCTTGAATTAATCAGTGGGAAAAGTAGTAGCATAGCTGCATTTGAAGAGGACTATTTGGTTTTGGTGGAATGGATTCATTTCCAGCATCAACTTGCTTGGAAGCTGAAAGAAGAAAATAGGCTTCTAGACCTTGTTGATTCAGAACTAAGTGAGTATGATGAGAGTGAGGTGTATCGGTTTCTTGTGGTGGCTCTATTTTGCACCCAATCAGCTGCTCAGCATAGACCAAGCATGAAACAAGCATTGAAAATGCTTTCCAAGGAAGTTCATCTTAATGAGAAGGCATTGACTAAGCCTGGAATATGCAGATGGCACAGCACTGGAAAAAGGGGTGGTTCTTTGAATGAGACATCATCTCAGGCAATCAAGTACAGAAAAACTGTAAATCCACATGAAGCAGCTTCAACCCACTTTAGTGGTACAGATGTTGTGACAGAGATGCTTCCAAGATGA 1167 0.4087 MDMFCKWLGALNCFGRRDDPADQPHEQVVATKKFSYNSLRSATKDFHPSSKIGGGGYGVVYKGVLRDGTQVAIKSLSAESKQGTHEFMTEIDMISNMRHPNLVELIGCCIEDSHRILVYEFMENNSLASSLLGSKGKYVALDWPKRAAICRGTASGLCFLHEEAQPNIVHRDIKASNILLDGNFNPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGILMLELISGKSSSIAAFEEDYLVLVEWIHFQHQLAWKLKEENRLLDLVDSELSEYDESEVYRFLVVALFCTQSAAQHRPSMKQALKMLSKEVHLNEKALTKPGICRWHSTGKRGGSLNETSSQAIKYRKTVNPHEAASTHFSGTDVVTEMLPR* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01850 388 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 346 - -
Lapu1g01850 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Lapu1g01850 388 Gene3D Transferase(Phosphotransferase) domain 1 122 337 - -
Lapu1g01850 388 Gene3D Phosphorylase Kinase; domain 1 16 121 - -
Lapu1g01850 388 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Lapu1g01850 388 SUPERFAMILY Protein kinase-like (PK-like) 26 323 IPR011009 -
Lapu1g01850 388 FunFam cold-responsive protein kinase 1 17 121 - -
Lapu1g01850 388 ProSiteProfiles Protein kinase domain profile. 46 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01850 388 SMART serkin_6 46 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01850 388 FunFam Putative LRR receptor-like serine/threonine-protein kinase 122 335 - -
Lapu1g01850 388 Pfam Protein kinase domain 47 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01850 388 CDD STKc_IRAK 65 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01850 Lapu-Chr1 31609854 31616755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01850 34 338 Receptor kinase-like Gene Family AT1G56120 52.787 1.75e-103 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu1g01850 Pkinase 3.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01850 - - gmx:100785766 678.707