Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01847 ATGGGGCCAAGCAGTTTTCTATGGAACTGTACTAAAAAATTGGTCACAGCTGCTGTCGTCACTGTGACTGTGTCTGATCGATATGTGACTGTTGTTCCTGTTCGAGGTGGCTCTATGTCTCCCACTTTAAATCCTAAGAGCAGTTCTTATTTTGATGACTATGTTTTGGTTGAGAAATTTTGTCTTTGGAAGTACAATTTTTCAAGTGGCGAAGTGGTGGTCTTCCGCTCCCCAGTAAATCACAAGGAGACACACATAAAAAGAATAGCTGCATTACCTGGTGAATGGTATGGCACTCATCATAACCAAGATGTTATTCAAATTCCAGTAGGACATTGTTGGGTCGAGGGAGACAACACAGCCTCTAGCATGGACTCAAAGTCATTTGGACCAATTCCTATGGCCCTAATTCGGGGAAGGGCTACCTATGTTGTGTGGCCTCCTCAAAGAATAGGAGCTGTCAAGAGTACTCCACCACCACAAAGATTATCTTCTGTAGTATTAAAATAA 510 0.4255 MGPSSFLWNCTKKLVTAAVVTVTVSDRYVTVVPVRGGSMSPTLNPKSSSYFDDYVLVEKFCLWKYNFSSGEVVVFRSPVNHKETHIKRIAALPGEWYGTHHNQDVIQIPVGHCWVEGDNTASSMDSKSFGPIPMALIRGRATYVVWPPQRIGAVKSTPPPQRLSSVVLK* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01847 169 PRINTS Bacterial leader peptidase 1 (S26A) family signature 85 97 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lapu1g01847 169 PRINTS Bacterial leader peptidase 1 (S26A) family signature 108 127 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lapu1g01847 169 PRINTS Bacterial leader peptidase 1 (S26A) family signature 27 43 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lapu1g01847 169 Pfam Signal peptidase, peptidase S26 9 95 IPR019533 GO:0004252|GO:0006465
Lapu1g01847 169 Pfam Signal peptidase, peptidase S26 104 146 IPR019533 GO:0004252|GO:0006465
Lapu1g01847 169 SUPERFAMILY LexA/Signal peptidase 29 154 IPR036286 -
Lapu1g01847 169 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 1 163 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Lapu1g01847 169 CDD S26_SPase_I 31 141 IPR019533 GO:0004252|GO:0006465
Lapu1g01847 169 Gene3D Umud Fragment, subunit A 26 158 - -
Lapu1g01847 169 FunFam Mitochondrial inner membrane protease subunit 25 159 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01847 39 158 MADS-box Gene Family AT1G29960 35.714 1.89e-19 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01847 K09648 - gmx:100527429 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01847 1 31574503 31577093 Lapu1g01847 1 31574503 31577093 ECH