Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01846 ATGGGGTTTGGTCTGAAAAGGAGGAAGAAGAGAGGGGAAGCAGAGGAAGAAGGAAGGATGCGCAAGTCTTTCAAGGATTCACTCAAAGCTCTTCAAGCTGACATCCAGTTTGCCAACACACTAGCTTCTGAGTATCCAAGTGGCGGTGCCAGCTTCCAAATGAGATTGTCCTACAGCCCAGCTGCTCAATTCTTCCTTTTCCTGGTTCAGTGGACTGACTGTCACCTTGCTGGAGCCTTAGGATTGCTCAGAATTCTAATATACAAGGCATTTGAAGATGGGAAGACAACCATATCCATTTATGAAAGAAAAGCCAGTCTAAAGGAGTTCTATGGTGTGGTGTTTCCCTCTTTATTGCAACTTCACAGAGGAATCACTGATGTTGAAGACAGAAAACAAAAAGATCTATCTGCTACTAAGTATAAGCTTAAAGATTTGACAAGCAAAGGAAAGCTTTCTGAAATTGACACGGAGAGAGAAGAAGAGTGTGGTATTTGCTTGGAGATGAATAGCATGGTTGTATTGCCCAACTGCAATCATTCAATGTGTATGAAATGCTACCAAGACTGGCACTCAAGATCTCAATCTTGTCCTTTCTGTCGAGACAGTCTCAAAAGAGTAAACTCTGATGATCTTTGGATCTACATTAGCAGCAGTGAGATCAATGACTTGGCTTCAATCAACAAGGAGAATGTGAAAAGATTATCTGTGTATATAGAAAGTTTGCCTCTAATAGCCAGATCCTATATTCACCATGTCTTATCGTCACCACTGGTGATTGCCAACTAG 789 0.417 MGFGLKRRKKRGEAEEEGRMRKSFKDSLKALQADIQFANTLASEYPSGGASFQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYKAFEDGKTTISIYERKASLKEFYGVVFPSLLQLHRGITDVEDRKQKDLSATKYKLKDLTSKGKLSEIDTEREEECGICLEMNSMVVLPNCNHSMCMKCYQDWHSRSQSCPFCRDSLKRVNSDDLWIYISSSEINDLASINKENVKRLSVYIESLPLIARSYIHHVLSSPLVIAN* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01846 262 PANTHER RING FINGER PROTEIN 41, 151 22 246 - -
Lapu1g01846 262 ProSiteProfiles Zinc finger RING-type profile. 163 201 IPR001841 -
Lapu1g01846 262 MobiDBLite consensus disorder prediction 1 20 - -
Lapu1g01846 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 211 IPR013083 -
Lapu1g01846 262 ProSitePatterns Zinc finger RING-type signature. 178 187 IPR017907 -
Lapu1g01846 262 FunFam RING/U-box superfamily protein 144 210 - -
Lapu1g01846 262 SUPERFAMILY RING/U-box 152 206 - -
Lapu1g01846 262 SMART ring_2 163 200 IPR001841 -
Lapu1g01846 262 Pfam Zinc finger, C3HC4 type (RING finger) 160 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01846 Lapu-Chr1 31570087 31573329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01846 107 208 C3H Transcription Factor Family AT5G01960 28.037 6.81e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01846 K25840 - gmx:100814293 451.44