Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01841 ATGGGTTCTCACCAACTAGAACCATGGCTATTGGAGAACGGCAACCCCAAGGTGTTGACCAGGGAAATGAGACATTCCCGCACTGCACACAGCAAGTCCTCCAACTCCCTTCGCAAGAAGTCTGATCGCACTCTTGTCTCCAAGGTTCCCTGTGCCACTCTCCGAAACGTGCTTTTCAACTTGCAAGAGGTTCTTCTTGGCACCAAGCTTTCCATTCTCATCCCTGCCATTCCCGCTGCCATCATTGCTGAGTACTGTGGCCTTGGAAGACCTTGGGTTTTTGTGTTGAGCTTACTTGGACTTACCCCACTTGCTGAACGTGTGAGCTTCATCACAGAACAAGTTGCCTTCTACACTGGTCCCACAGTTGGAGGACTTCTGAACGCAACATGTGGGAATGTTACTGAGCTCATAATAGCAATATTTGCCCTTAGCAGTAACAAAATTGCTGTGGTCAAGTTTTCTCTGTTGGGTTCTATTCTTTCAAACCTTCTTCTGGTTCTTGGGACCTCTCTATTATGTGGTGGCATTGCTAACCTTAGAGTGGAACAAAAATATGATAGAAGACAAGGAGATGTGAATTCACTTATGCTGTTGTTGGCATTGTTGTGCTACTTACTTCCAATGCTGTTCAAATATAGCGCTGCCTCAGCTGCTCTCACCGTTGATCCTTCACTTCACTTGTCAAGAGCTTCTAGCATTGTGATGCTGATTGCGTATGTTGTTTACATTATCTTTCAACTGTGGACACACAGGGAGTTATTTGAATCAGAAGATGAGGATGAAGATGACAACAATAGTTCAGATGAACAAGCTCTCATTGGACTCTGGAGTGGCATTGCTTGGCTGATTGGGATGACTGTATTCATTGCTTTGTTGTCTGAATATGTGGTGGATACAATTGAGGATGCATCAGATTCATGGGGTTTGTCTGTGAGCTTCCTCAGCATAATCTTGCTACCAATAGTTGGCAATGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGACATCACATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGTGGTCCCTTTATGCGTGATCGTTGCTTGGACAATGGGTATCAAAATGGATTTGAACTTCAACCTCCTAGAGACTGGTTCCATTGCTTTGGCAATAATAGTCACAGGCTTCACTTTACAGGATGGTACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTGCTACATAGTTATTGGGGCTTGTTTCTTCGTACAAAGAACACCCTTTAACCATGCTGATGTTACAAACGTCATGCCTAAACCAGCCATTAATTCAGTTTTAAGTGCTTAG 1347 0.4425 MGSHQLEPWLLENGNPKVLTREMRHSRTAHSKSSNSLRKKSDRTLVSKVPCATLRNVLFNLQEVLLGTKLSILIPAIPAAIIAEYCGLGRPWVFVLSLLGLTPLAERVSFITEQVAFYTGPTVGGLLNATCGNVTELIIAIFALSSNKIAVVKFSLLGSILSNLLLVLGTSLLCGGIANLRVEQKYDRRQGDVNSLMLLLALLCYLLPMLFKYSAASAALTVDPSLHLSRASSIVMLIAYVVYIIFQLWTHRELFESEDEDEDDNNSSDEQALIGLWSGIAWLIGMTVFIALLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDITLGVALGSATQIAMFVVPLCVIVAWTMGIKMDLNFNLLETGSIALAIIVTGFTLQDGTSHYMKGLVLLLCYIVIGACFFVQRTPFNHADVTNVMPKPAINSVLSA* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01841 448 FunFam Vacuolar cation/proton exchanger 267 423 - -
Lapu1g01841 448 NCBIfam calcium/proton exchanger 56 422 - -
Lapu1g01841 448 FunFam Vacuolar cation/proton exchanger 121 265 - -
Lapu1g01841 448 Gene3D - 121 260 IPR044880 -
Lapu1g01841 448 Gene3D - 267 422 IPR044880 -
Lapu1g01841 448 Pfam Sodium/calcium exchanger protein 280 417 IPR004837 GO:0016020|GO:0055085
Lapu1g01841 448 Pfam Sodium/calcium exchanger protein 92 249 IPR004837 GO:0016020|GO:0055085
Lapu1g01841 448 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 24 427 IPR004713 GO:0006812|GO:0008324|GO:0016020
Lapu1g01841 448 NCBIfam calcium/proton exchanger 74 422 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01841 Lapu-Chr1 31500460 31504741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01841 7 427 Antiporters AT2G38170 69.302 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01841 K07300 - gmx:100816231 725.702