Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01832 ATGCACCAATTAATTCACTCCTCACTCTCTCCCACCACTCTTCCTTTTCTCTCTACAACAATGCCCCACCCTCGCTCCACCACCACGCTACCGCCGCAAGAGACTGCTTCCGCCAGCTCTCAGACGCCGCCGGAACGGTCACGCGAGCCGCACCGTGCGAGTGGCCCTTCCACCAGGGGCAACTGGAGCATCGACGATGGTTCCGCCGCAGCTACCTCCGTTGTTAGAGACGAAACGTGTTCCTGCTTCGCCGTTGTCTTCAGCTTTTGGTTATTCGTGTCGATGACTATGATACTGGGGGTTTATGGGTCCATGACCATCGTGCTTGGTCCAAAGTCTTCGATAGTTTTCCAACCTAGTTCCGTGTTCGTGCAATCTGTAAAGGTAGAAAATTTAATGGCAAACTCTGGACCAGGACCCATTCTTTATGGTACATATGGGTATCCCCCACTTGATGTTGTTAGCACTTGGGCCGAAACTCGTAATGTGTCCCTTCCCTCTGGCGCAGACAAGGAATGGAAAATTTATCTAAATAGAGGGAGTGCAATAAATATTTCGTATCACGTTAGTTCTAGGAGCTCTTCTGTTTTCCTTATAATTGCACAAGGGACCGAGGCCTTCAATCGGTGGCGGGAGAACCCAACAGAACCTAATACAACTCTGTCATGGAATGTGATCCAAGGAAGTGGTACGATTACACAGGAAATATTGTGGTCATCGAATTATTACGTGGCATTGGGTAATTTGGATGAGGATGTGGAGGTGGCATTAAACCTCAGTGTAAACTCCTCTTTGCACAATACAACGAATGCTTACTACAAATGTGCTCTTACCAGTAGTAGTCCATGCAGTTTAAATGTTTACTTTCTTCATGGAAGTGCAGCTGTTTTAGTTACTCCTGGTCCGCAACAGAATGCATCCAATGAATGGTATATCAAACTGTCCTATGGACCAAGATGGGTAACCTATATTTTTGGCATTGGTGGATTGACTTTGCTTGTGTTTTGGACCTTCAACTTATTGAGCAAGCTTCAGTCCGCTCACGAAGATAGAGCAGGATTTAGAACTGGGGGAACAGAACCTCAGAGAGTACCTCTGCTTTCTCACAAAGATGATGATCTTTCAAGTTGGGGTTCATCATATGATTCCTTGACACAAGACGAGGAGGATCTTGACTTTCTTCCAGGAGGCCCCATTGACGGGAAGCTTTCAGGTGATGGTGAAACCAGTAACAATACACAGCGTCTTTGTGCTATTTGCTTTGATGCTCCAAGGGACTGCTTCTTCCTTCCATGTGGACACTGTGTGGCTTGTTTTGCATGTGGAACTAGGATAGCTGAGGCTTCTGGTACTTGCCCTGTTTGTCGTAGAAACATGAAGAAGGTTAGGAAGATTTTCACTGTTTGA 1407 0.4648 MHQLIHSSLSPTTLPFLSTTMPHPRSTTTLPPQETASASSQTPPERSREPHRASGPSTRGNWSIDDGSAAATSVVRDETCSCFAVVFSFWLFVSMTMILGVYGSMTIVLGPKSSIVFQPSSVFVQSVKVENLMANSGPGPILYGTYGYPPLDVVSTWAETRNVSLPSGADKEWKIYLNRGSAINISYHVSSRSSSVFLIIAQGTEAFNRWRENPTEPNTTLSWNVIQGSGTITQEILWSSNYYVALGNLDEDVEVALNLSVNSSLHNTTNAYYKCALTSSSPCSLNVYFLHGSAAVLVTPGPQQNASNEWYIKLSYGPRWVTYIFGIGGLTLLVFWTFNLLSKLQSAHEDRAGFRTGGTEPQRVPLLSHKDDDLSSWGSSYDSLTQDEEDLDFLPGGPIDGKLSGDGETSNNTQRLCAICFDAPRDCFFLPCGHCVACFACGTRIAEASGTCPVCRRNMKKVRKIFTV* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01832 468 Pfam Domain of unknown function (DUF4792) 139 207 IPR032008 -
Lapu1g01832 468 ProSiteProfiles Zinc finger RING-type profile. 417 456 IPR001841 -
Lapu1g01832 468 PANTHER OS05G0521000 PROTEIN 57 468 - -
Lapu1g01832 468 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 468 IPR013083 -
Lapu1g01832 468 MobiDBLite consensus disorder prediction 1 65 - -
Lapu1g01832 468 FunFam E3 ubiquitin-protein ligase APD2 406 467 - -
Lapu1g01832 468 Pfam Zinc finger, C3HC4 type (RING finger) 414 462 - -
Lapu1g01832 468 SMART ring_2 417 455 IPR001841 -
Lapu1g01832 468 Pfam Domain of unknown function (DUF4793) 232 335 IPR032010 -
Lapu1g01832 468 MobiDBLite consensus disorder prediction 1 44 - -
Lapu1g01832 468 SUPERFAMILY RING/U-box 416 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01832 Lapu-Chr1 31358558 31363868 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01832 390 465 C3H Transcription Factor Family AT3G06140 31.579 1.26e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01832 - - gmx:100791057 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01832 1 31358558 31363868 Lapu1g01832 1 31358558 31363868 ECH