Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01831 ATGGGCGTGGACTACTACAAGATTCTTCAGGTAGATAGGAGCGCCAAAGATGATGATATTAAGAAAGCATATCGAAGCCTGGCCATGAAGTGGCACCCTGATAAGAACCCTAACAACAAGAAAGGCGCTGAAGCTAAATTCAAGCAAATATCAGAAGCATATGATGTCTTGAGTGATCCACAGAAGCGAGCCGTGTATGATCAGTATGGTGAGGAGGGGTTGAATGGGGTGCCGCCGGGGGGTGGCGGTGGTTTTCCTGGTGGCAGCGATGGTGGACCGACAACATTCCGGTTCAATCCTAGAAGTGCTGATGATATATTTTCTGAGTTTTTCGGGTTTACGAGCCCCCTTGGTCGTGGTGGAATGGGGGACATGGGTGGCCGACCTGGATTTTCTAGGGGTGGCCCGTTTGGTGAAGATATTTTTGCTCAATTTCGGAATGCAGTTGGGGAGGGCTCTGGACATATGCCTAGGAAAGGGGCACCCATCGAGAGAACATTGCATTGTAGTTTGGAGGATTTGTATAAAGGGACTACCAAGAAAATGAAGATTTCAAGGGATGTTAACGATGCCACTGGGAGACCCTCCACAGTAGAGGAAATCCTCGCAATTGAGATAAAGCCAGGTTGGAAGAAAGGAACAAAAATCACATTTCCTGAAAAGGGAAATGAACAAAGAGGAGTTATCCCTGCAGACCTTGTATTTATCATCGATGAGAAGCCTCATAGCCTCTTTAAGAGGGATGGCAATGATCTTGTTGTCACCCAGAAAATATCTCTTGTAGAAGCCTTGACAGGTTACACAGTTCAGCTGACAACCCTTGATGGACGGAATCTGACAATCCCTGTTAACAACACCATTAGTCCGACATACGAAGAAGTTGTAAAAGGAGAGGGTATGCCAATTCCCAAAGAACCTTCCAGGAAGGGGAACTTGAGAATCAAGTTCAATATCAAGTTTCCCTCCAGGCTTACATCCGAACAGAAAAGTGGCATCAAACGATTACTCACATCTCCTTAA 1020 0.4608 MGVDYYKILQVDRSAKDDDIKKAYRSLAMKWHPDKNPNNKKGAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLNGVPPGGGGGFPGGSDGGPTTFRFNPRSADDIFSEFFGFTSPLGRGGMGDMGGRPGFSRGGPFGEDIFAQFRNAVGEGSGHMPRKGAPIERTLHCSLEDLYKGTTKKMKISRDVNDATGRPSTVEEILAIEIKPGWKKGTKITFPEKGNEQRGVIPADLVFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRNLTIPVNNTISPTYEEVVKGEGMPIPKEPSRKGNLRIKFNIKFPSRLTSEQKSGIKRLLTSP* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01831 339 SMART dnaj_3 3 62 IPR001623 -
Lapu1g01831 339 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Lapu1g01831 339 Pfam DnaJ domain 4 67 IPR001623 -
Lapu1g01831 339 Pfam DnaJ C terminal domain 163 321 IPR002939 -
Lapu1g01831 339 CDD DnaJ 4 59 IPR001623 -
Lapu1g01831 339 Gene3D - 242 322 - -
Lapu1g01831 339 SUPERFAMILY HSP40/DnaJ peptide-binding domain 156 247 IPR008971 GO:0006457|GO:0051082
Lapu1g01831 339 SUPERFAMILY Chaperone J-domain 3 95 IPR036869 -
Lapu1g01831 339 PRINTS DnaJ domain signature 24 39 IPR001623 -
Lapu1g01831 339 PRINTS DnaJ domain signature 62 81 IPR001623 -
Lapu1g01831 339 PRINTS DnaJ domain signature 6 24 IPR001623 -
Lapu1g01831 339 PRINTS DnaJ domain signature 42 62 IPR001623 -
Lapu1g01831 339 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 336 - -
Lapu1g01831 339 FunFam DnaJ subfamily B member 13 3 122 - -
Lapu1g01831 339 SUPERFAMILY HSP40/DnaJ peptide-binding domain 245 330 IPR008971 GO:0006457|GO:0051082
Lapu1g01831 339 CDD DnaJ_C 161 324 - -
Lapu1g01831 339 Gene3D - 162 240 - -
Lapu1g01831 339 Gene3D DnaJ domain 3 121 IPR036869 -
Lapu1g01831 339 FunFam Dnaj homolog subfamily b member 159 240 - -
Lapu1g01831 339 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Lapu1g01831 339 FunFam DnaJ subfamily B member 13 242 322 - -
Lapu1g01831 339 MobiDBLite consensus disorder prediction 73 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01831 Lapu-Chr1 31346585 31350064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01831 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 5.62e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01831 K09510 - gmx:100818358 568.926