Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01829 ATGGGTTCCTCTCGCTCACGTGCCTCTGCCAAAGAACGCCTACGTTGGACACAAGAACTCCATGATCACTTTGTGCTGGCTGTAAATAGACTAGGGGGCCCTGATAGGGCAACACCAAAAGGTATATTGAAAGGAATGAAGGTTATGGGTATTTCAGAGCTAAACATTTATCATGTCAAGAGCCACTTGCAGAAATACAGGATCTCCAAATTGATTCCAGAGTCTCCCACAAGAGGAAAACTTGAGAAGAGAAGCATATCAGATATACTTCCAAATTTTAGTTCTATATCTGCTCTTCAACTAAAGGATCTCCTTCAAATGCAGACAGAGAAGCAAAATCGCTTGAGTGATAAAACAGAGGTTCAGAGAAGTTTGAAGGTAAAAGTTGAAGCACAAGGAAGGTACTTGGAGAGAATTGGACAAAGTAATCACAGCAAAATAATAATTGGAAAAGCATGCAAGCCTTTTGCTTCTTCTACAACTGCACCTTTGCCTTCTCTTTCTGAGGAATCCGAATCATTGAAATCACAAACTGAGAAAGAGCATGAATCAGCCAAAAAGTTAAGAATTTCAGAAGAGGGTGTTTTTCCAACAAGTTTAGAACATGCATCATCCACCCCACCAGAATTCTACAACCAAACATGGAATCTTCCTTGGAGTCAGCTTGCAGAAGCATGCCAATCAACTTTGGATCCCAGTTTCTTATTTTGA 711 0.4051 MGSSRSRASAKERLRWTQELHDHFVLAVNRLGGPDRATPKGILKGMKVMGISELNIYHVKSHLQKYRISKLIPESPTRGKLEKRSISDILPNFSSISALQLKDLLQMQTEKQNRLSDKTEVQRSLKVKVEAQGRYLERIGQSNHSKIIIGKACKPFASSTTAPLPSLSEESESLKSQTEKEHESAKKLRISEEGVFPTSLEHASSTPPEFYNQTWNLPWSQLAEACQSTLDPSFLF* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01829 236 MobiDBLite consensus disorder prediction 173 190 - -
Lapu1g01829 236 Gene3D - 10 71 - -
Lapu1g01829 236 Pfam MYB-CC type transfactor, LHEQLE motif 100 139 IPR025756 -
Lapu1g01829 236 MobiDBLite consensus disorder prediction 160 207 - -
Lapu1g01829 236 SUPERFAMILY Homeodomain-like 10 68 IPR009057 -
Lapu1g01829 236 NCBIfam myb-like DNA-binding domain, SHAQKYF class 11 69 IPR006447 GO:0003677
Lapu1g01829 236 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 182 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01829 Lapu-Chr1 31327017 31331462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01829 3 152 G2-like Transcription Factor Family AT4G28610 43.590 1.79e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lapu1g01829 Myb_CC_LHEQLE 5.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01829 - - gmx:100527384 291.967