Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01827 ATGGGAAACTGCTGCAGATCCCCGGCCGCCGTGGCCCGGGAGGACGTCAAATCGAGCTTCTCCAACGCCGACCACCACGGCAAGCGAGGTTCCGGCGCCGAAGCCGTCAAACAGAAGGCGCCGATCACGGTCCTTGCTGGCGTGCCCAAGGAGAACATCGAGGACCGCTACCTCGTAGACCGCGAGCTCGGCCGCGGCGAGTTCGGGGTGACTTACCTCTGCATCGACCGCGACACGCGCGAGCTGCTCGCGTGCAAGAGCATCTCCAAGCGGAAGCTCCGGACCGCCGTCGACGTCGAGGACGTGCGCCGCGAGGTCGCCATCATGCGCCACCTGCCGGAGAGCCCCAGCATCGTGTCGCTCCGTGAGGCCTGTGAGGATGACAATGCCGTTCACCTCGTCATGGAGCTCTGCGAGGGTGGCGAGCTCTTCGACCGGATCGTCGCCCGCGGCCACTACACCGAGCGCGCTGCCGCCGCTGTCACAAGAACGATTGTGGAGGTCGTGCAGCTCTGCCACAAGCACGGGGTCATCCACCGTGACCTGAAACCGGAGAATTTCTTGTTTGCAAACAAGAAGGAGAATTCGCCGCTCAAGGCTATTGACTTCGGGCTTTCCATATTCTTCAAGCCAGGTGAGAGGTTCTCAGAAATTGTTGGAAGTCCATATTATATGGCTCCAGAAGTTCTCAAGCGGAATTATGGACCAGAAATAGATATATGGAGTGCAGGAGTAATTCTCTACATCTTACTGTGTGGTGTTCCCCCGTTTTGGGCTGAATCTGAGCAAGGAGTTGCACAGGCCATTCTTCGAGGGCTTATAGATTTCAAAAGGGAACCTTGGCCAAGTATTTCTGAAAGTGCTAAAAGTCTTGTTAGGCAAATGTTAGAACCAGATCCTAAGCTTCGATTAACAGCCAAACAAGTACTTGAGCATCCTTGGCTCCAAAATGCTAAGAAGGCTCCTAATGTTCCACTTGGAGATGTTGTCAAGTCAAGGCTTAAGCAATTTTCAATGATGAACAGATTCAAAAGAAAAGCCCTCAGGGTCATTGCTGATTTCTTATCTAATGAAGAAGTTGAAGACATCAAAGATATGTTCAAGAAGATGGATAATGATAATGATGGCATTGTTTCAATTGAAGAACTGAAAGCTGGATTTCGAAACTTTGGGTCTCAACTTGCAGAGTCTGAAATTCAGTTGCTTATTGAAGCTGTAGGTAGTAATGGTAAGGGAACACTAGACTACGGAGAATTTGTTGCTGTTTCCCTTCATTTAAAAAGGATGGCTAATGACGAGCATATTCGTAAGGCCTTCTCTTATTTTGACAAAGATGGGAATGGATATATTGAACCAGATGAGCTACGGAATGCCTTGATGGAAGATGGAGCAGATGATTGTACAGATGTAGCAAATGATATTTTCCAAGAAGTAGACACAGATAAGGATGGACGTATCAGCTACGATGAATTTGTTGCTATGATGAAAACTGGAACGGATTGGAGAAAGGCATCAAGGCATTATTCACGTGGGAGATTCAATAGCTTGAGCTTAAAGTTGATGAAAGATGGTTCTTTAAACTTAGGAAATGAGTAG 1596 0.4887 MGNCCRSPAAVAREDVKSSFSNADHHGKRGSGAEAVKQKAPITVLAGVPKENIEDRYLVDRELGRGEFGVTYLCIDRDTRELLACKSISKRKLRTAVDVEDVRREVAIMRHLPESPSIVSLREACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGERFSEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGLIDFKREPWPSISESAKSLVRQMLEPDPKLRLTAKQVLEHPWLQNAKKAPNVPLGDVVKSRLKQFSMMNRFKRKALRVIADFLSNEEVEDIKDMFKKMDNDNDGIVSIEELKAGFRNFGSQLAESEIQLLIEAVGSNGKGTLDYGEFVAVSLHLKRMANDEHIRKAFSYFDKDGNGYIEPDELRNALMEDGADDCTDVANDIFQEVDTDKDGRISYDEFVAMMKTGTDWRKASRHYSRGRFNSLSLKLMKDGSLNLGNE* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01827 531 Gene3D Phosphorylase Kinase; domain 1 58 142 - -
Lapu1g01827 531 SUPERFAMILY Protein kinase-like (PK-like) 46 340 IPR011009 -
Lapu1g01827 531 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524
Lapu1g01827 531 FunFam Calcium-dependent protein kinase 1 59 142 - -
Lapu1g01827 531 PANTHER SERINE/THREONINE-PROTEIN KINASE 50 491 - -
Lapu1g01827 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Lapu1g01827 531 FunFam Calcium-dependent protein kinase 7 324 499 - -
Lapu1g01827 531 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01827 531 CDD STKc_CAMK 56 314 - -
Lapu1g01827 531 ProSitePatterns EF-hand calcium-binding domain. 371 383 IPR018247 -
Lapu1g01827 531 ProSiteProfiles EF-hand calcium-binding domain profile. 358 393 IPR002048 GO:0005509
Lapu1g01827 531 Pfam EF-hand domain pair 433 496 IPR002048 GO:0005509
Lapu1g01827 531 Pfam EF-hand domain pair 361 421 IPR002048 GO:0005509
Lapu1g01827 531 SMART efh_1 470 498 IPR002048 GO:0005509
Lapu1g01827 531 SMART efh_1 434 462 IPR002048 GO:0005509
Lapu1g01827 531 SMART efh_1 398 426 IPR002048 GO:0005509
Lapu1g01827 531 SMART efh_1 362 390 IPR002048 GO:0005509
Lapu1g01827 531 Gene3D - 324 499 - -
Lapu1g01827 531 CDD EFh 434 496 IPR002048 GO:0005509
Lapu1g01827 531 Gene3D Transferase(Phosphotransferase) domain 1 143 323 - -
Lapu1g01827 531 ProSiteProfiles EF-hand calcium-binding domain profile. 430 465 IPR002048 GO:0005509
Lapu1g01827 531 ProSitePatterns EF-hand calcium-binding domain. 479 491 IPR018247 -
Lapu1g01827 531 MobiDBLite consensus disorder prediction 16 35 - -
Lapu1g01827 531 FunFam calcium-dependent protein kinase 13 143 323 - -
Lapu1g01827 531 MobiDBLite consensus disorder prediction 18 33 - -
Lapu1g01827 531 Pfam Protein kinase domain 59 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01827 531 SUPERFAMILY EF-hand 344 522 IPR011992 -
Lapu1g01827 531 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01827 531 ProSiteProfiles EF-hand calcium-binding domain profile. 466 501 IPR002048 GO:0005509
Lapu1g01827 531 ProSitePatterns EF-hand calcium-binding domain. 443 455 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01827 Lapu-Chr1 31286678 31295261 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01827 1 528 EF-hand Containing Proteins AT1G74740 69.101 0.0 760
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lapu1g01827 Pkinase 4.2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01827 K13412 - gmx:100783922 1020.76