Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01826 ATGGAGGCTCATCATCTCCATCACCATCAGCAGCGGCAACAGCAGCAACAACATCATCAACAACAGCAACATCAGCATCACCACCCTCACAACATCACAACCAGTGCTAACGTGGATGCCACGGATAGGTTCCCCCAATGGAGCATCCAGGAGACAAAAGAGTTCCTCGTGATCCGTGCGGAGCTGGATCAGACTTTCATGGAGACAAAGAGGAACAAACAGCTTTGGGAAGTCATCTCCAACCGGATGAAGGAAAAGGGTTTCCATAGAAGTGCAGAACAGTGCAAGTGCAAGTGGAAAAACCTCGTTACCCGCTATAAGGGTTGTGAAGCGATAGAGCCAGAGGCGATGAGGCAGCAATTCCCGTTTTACAATGAGCTTCAAGGGATTTTCACATCAAGGATGCAGAGAATGTTGTGGGCAGAAGCAGAAGGAGGGTCGAAGAAGAAGGTGGTGCAGCTTTCATCGGAGGATGAGGAAGAGGGAAATGAGGAGAGTGAGGGAGATCAGAAGGGTAGCATGGTGAAAAAGAAGAAGAAGGGGAAGATGGTAATTGGAGGAGGGAGTGGTAGCAGTAGCAACATGGAGAGTTTGAAGGAGATCATGGAGGAGTTCATGAGGCAACAGATGCAGATGGAGGCACAGTGGATGGAGGCGTTTGAGGCAAGGGAGAATGAGAGGAGGATGAAGGAGATGGAGTGGAGGCAAACCATGGAGGCATTGGAGAATGAGAGGATGATGATGGACCAAAGATGGAGAGAGAGGGAAGAGCAAAGAAGGATTAGGGAAGAAGTTAGGGCTGACAAGAGAGATGCTCTAATCACAGCTCTTCTGAACAAGCTCAGAAGAGAAGAAATGTAG 861 0.4901 MEAHHLHHHQQRQQQQQHHQQQQHQHHHPHNITTSANVDATDRFPQWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNRMKEKGFHRSAEQCKCKWKNLVTRYKGCEAIEPEAMRQQFPFYNELQGIFTSRMQRMLWAEAEGGSKKKVVQLSSEDEEEGNEESEGDQKGSMVKKKKKGKMVIGGGSGSSSNMESLKEIMEEFMRQQMQMEAQWMEAFEARENERRMKEMEWRQTMEALENERMMMDQRWREREEQRRIREEVRADKRDALITALLNKLRREEM* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01826 286 Gene3D - 47 108 - -
Lapu1g01826 286 MobiDBLite consensus disorder prediction 1 33 - -
Lapu1g01826 286 CDD GT1 45 110 - -
Lapu1g01826 286 MobiDBLite consensus disorder prediction 150 194 - -
Lapu1g01826 286 Coils Coil 195 215 - -
Lapu1g01826 286 PANTHER FI21293P1 11 282 - -
Lapu1g01826 286 Pfam Myb/SANT-like DNA-binding domain 46 128 IPR044822 -
Lapu1g01826 286 ProSiteProfiles Myb-like domain profile. 47 103 IPR001005 -
Lapu1g01826 286 FunFam Zinc finger and SCAN domain-containing 20 47 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01826 Lapu-Chr1 31259680 31261033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01826 33 284 Trihelix Transcription Factor Family AT5G01380 52.650 1.06e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lapu1g01826 Myb_DNA-bind_4 2.9e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01826 - - gmx:100794230 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01826 1 31259680 31261033 Lapu1g01826 1 31259680 31261033 ECH