Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01800 ATGACTACTCCCTTGGCTTACCAAGAGCACCTTCCTGCAGCACCCGGATGGCTGAACAAAGGGGACAACGCTTGGCAGTTAACAGCAGCAACTCTTGTTGGTCTTCAAAGCATGCCAGGTCTTGTGATCCTCTATGCCAGCATAGTGAAGAAAAAATGGGCTGTGAACTCAGCTTTCATGGCTCTGTATGCCTTTGCAGCAGTTCTCCTATGTTGGGTGCTTGTGTGTTACCGCATGGCCTTCGGGGAGGAACTTTTCCCCTTCTGGGGTAAGGGTGCCCCAGCTCTAGGCCAAAAGTTCCTCACAAAACGAGCCATAGTTATTGAAACCACCCACCGCTTTGATAATGGGACTGTTGAGAGCCCTGCTGAAGAACCCTTTTACCCCATGGCCTCACTTGTCTATTTTCAATTCACTTTTGCTGCTATTACTCTCATCTTGTTGGCTGGCTCTGTCCTTGGCCGAATGAACATCAAGGCTTGGATGGCTTTTGTGCCTCTTTGGTTAATCTTTTCTTACACTGTTGGGGCTTTCAGTCTCTGGGGTGGTGGCTTTCTCTATCAATGGGGTGTCATAGATTACTCTGGTGGCTATGTCATCCACCTTTCCTCTGGAATCGCTGGTTTAACTGCTGCTTATTGGGTTGGACCAAGGTTGAAGAGTGACAGGGAGAGGTTTCCACCAAACAATGTGCTGCTGATGCTTGCAGGTGCAGGGTTGTTGTGGATGGGGTGGTCAGGGTTCAATGGTGGAGCACCATATGCTGCAAATCTAGCATCTTCAGTTGCTGTGCTGAACACAAACATTTGTGCAGCCACTAGCCTCCTTGTATGGACAACTTTGGATGTCATTTTCTTCGGGAAACCTTCTGTGATTGGAGCTGTGCAGGGTATGATGACTGGACTTGTATGCATCACACCAGGAGCAGGGCTTGTGCAATCGTGGGCTGCTATAGTGATGGGAATATCATCTGGGAGCATTCCATGGGTCACCATGATGATTTTGCATAAAAAGTCAACCTTGTTGCAAAAGGTTGATGACACCCTTGGTGTGTTTCACACTCATGCTGTGGCTGGGCTTTTGGGTGGTCTGCTCACAGGTCTATTTGCAGAACCAGCTCTGTGTAGGTTACTATTGCCAGTTAGCAACTCAAGGGGTGCATTCTATGGTGGAGATGGTGGCATGCAATTCTTGAAGCAGTTGGTGGCAGCCATGTTTGTGATTGGATGGAACTTGGTCTCCACCACCATCATTCTCCTTTTCATAAAATTGTTCATACCCTTGAGGATGCCGGACGAGCAGCTGGAGATCGGCGACGACGCCGTCCACGGCGAGGAAGCCTATGCCCTGTGGGGTGATGGAGAAAGATATGACCCAACTAGGCATGGCTCCTTGCACTCTGGCAACACTGCTGTGTCACCTTATGTCAATGGTGCAAGAGGGGTGACTATAAACTTATGA 1461 0.4908 MTTPLAYQEHLPAAPGWLNKGDNAWQLTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLLCWVLVCYRMAFGEELFPFWGKGAPALGQKFLTKRAIVIETTHRFDNGTVESPAEEPFYPMASLVYFQFTFAAITLILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHLSSGIAGLTAAYWVGPRLKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANLASSVAVLNTNICAATSLLVWTTLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGISSGSIPWVTMMILHKKSTLLQKVDDTLGVFHTHAVAGLLGGLLTGLFAEPALCRLLLPVSNSRGAFYGGDGGMQFLKQLVAAMFVIGWNLVSTTIILLFIKLFIPLRMPDEQLEIGDDAVHGEEAYALWGDGERYDPTRHGSLHSGNTAVSPYVNGARGVTINL* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01800 486 FunFam Ammonium transporter 6 451 - -
Lapu1g01800 486 PRINTS Rhesus blood group protein signature 263 285 IPR002229 GO:0005886
Lapu1g01800 486 PRINTS Rhesus blood group protein signature 137 153 IPR002229 GO:0005886
Lapu1g01800 486 PRINTS Rhesus blood group protein signature 232 250 IPR002229 GO:0005886
Lapu1g01800 486 PANTHER AMMONIUM TRANSPORTER MEP2 10 458 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lapu1g01800 486 ProSitePatterns Ammonium transporters signature. 193 218 IPR018047 GO:0008519|GO:0016020|GO:0072488
Lapu1g01800 486 Gene3D Ammonium transporter AmtB like domains 4 451 IPR029020 -
Lapu1g01800 486 Pfam Ammonium Transporter Family 24 448 IPR024041 GO:0008519|GO:0016020|GO:0072488
Lapu1g01800 486 NCBIfam ammonium transporter 22 448 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lapu1g01800 486 SUPERFAMILY Ammonium transporter 17 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01800 Lapu-Chr1 30989073 30992865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01800 130 486 Inorganic Solute Cotransporters AT2G38290 78.273 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01800 K03320 - gmx:100790119 920.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01800 1 30989073 30992865 Lapu1g01800 1 30989073 30992865 ECH