Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01783 ATGAAGCAAGTAGTAGGAATGGTAGTTTCCAATAAGATGCAAAAATCTGTTGTGGTGGCAGTGGATAGACTATTCTACCACAAGGTATACGATCGTTATGTCAAGCGCACCTCCAAATTCATGGCTCATGATGAGAACAACCTCTGTAACATTGGTGACAAAGTTCGACTGGATCCTTCAAGACCATTGAGCAAGCATAAACATTGGATTGTTGCTGAAATTCTTAAGAAGGCACGGATATATGTTCCTCTCTCCACCACAATGTCTGATAATGTCAGCTCCAGCTCTGAAGCACCTGCTTCATAA 306 0.4183 MKQVVGMVVSNKMQKSVVVAVDRLFYHKVYDRYVKRTSKFMAHDENNLCNIGDKVRLDPSRPLSKHKHWIVAEILKKARIYVPLSTTMSDNVSSSSEAPAS* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01783 101 SUPERFAMILY Nucleic acid-binding proteins 2 84 IPR012340 -
Lapu1g01783 101 PRINTS Ribosomal protein S17 family signature 52 62 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lapu1g01783 101 PRINTS Ribosomal protein S17 family signature 20 43 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lapu1g01783 101 PRINTS Ribosomal protein S17 family signature 62 69 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lapu1g01783 101 Pfam Ribosomal protein S17 6 73 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lapu1g01783 101 Hamap 30S ribosomal protein S17 [rpsQ]. 1 76 IPR019984 GO:0003735|GO:0005840|GO:0006412
Lapu1g01783 101 Gene3D - 1 98 IPR012340 -
Lapu1g01783 101 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 80 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lapu1g01783 101 FunFam 30S ribosomal protein S17 1 100 - -
Lapu1g01783 101 NCBIfam 30S ribosomal protein S17 2 71 IPR019984 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01783 6 75 Cytoplasmic Ribosomal Protein Gene Family AT4G30800 36.620 7.40e-06 40.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01783 K02961 - gmx:100305504 186.422