Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01780 ATGAGAGGTAAGGGAGGGCCTCAGAACTCCGATTGCAAGTTCAGAGGTGTGAGGCAGAGAATTTGGGGGAAATGGGTTGCTGAGATTCGCGAACCAATCAATGGCAAGCTTGTGGGTGAGAAGGCAAATAGGCTTTGGCTTGGTACTTTCTCCACTGCACTTGAAGCTGCTCTAGCTTATGATGAAGCTGCTAAGGCCATGTACGGCCCCTGTGCCCGTTTGAATTTTCCTAAGCCTTCTGTGGAGCCAGTAGAATCTAATGGATCATCATCTAGTGGATGTGATAAAAAATCACCAAGTGGCTCTTCAGAGAATAACGGTGATGTTACAAAAGCTGAGTTGGATAGGAATCTTCATCAGCCTCATGAAGAGAAACCAAGGCTTTCTGAGGTTGGTGTCTTTAAGGTAACAGAAGAGAAACTGGTTCTTTCTGGAAGTTGTGTATCTGTTGACTCAATAGAGGAGTTGAAGAAAATGACAACAGGCTTTGAACAATGTCAAACAAGTGAAGAATGTAAGGAATTAACTTTGAAGAATGTTAAGTCTGAAATACCTGAAGAAAGTGAAGGAATAGAGCGAGAAATGGAGAGAGTTTGGAAAGATTCTGGCATTGGTGAAGAGGGTAATCTCTTGCAGAAGGAACCTGTGGACATAGCCATGAATACAGGAGCTAACTATTGCAGCTCTTCTGATGCTGCTGAACATGACGTTGTAGAGAAACATGAAGAAACAAGAGGAGCATCAGTTGAAACTTTGAAATCATGTGAGTTAAGCTGCAGCAACCATTGCCTTGGATATATACATAACATGTTGCCAGATGGCAATACAAGATCACATTCTGAGCACTTTAGTAACATCCAAACTGAGGCATCTATAGCAAGGAAACATACCGAGGAAGTAATTTCTGAAATCCTGGAGCTATGTCACAGCAAGTGCTTGAAGATTAGTCATGATCAGTCACCACATGAGCATTATTATAAAACTGAACATTTGGATGAGATGAGAACTAAGCTTAAGTGTTTGGAATGCAAGCTGAGAGCACATTCTATTCATTACAAGAGTCAGGCACCCATAGTTGGGGATTCCGATTATCCTTCAATGCAGGAAATTCCTATGTTTGGTGGTGGCACTGTTGGACCAATTGAAAGCATGTCCCAAGTTGATGCTATGAACAACATCAACACAAACAGAAATTCACTCCCTGGATTTAGTTCTGGGCATAGTAGGAAGTTGTGTGATCTTTCTCAACAGCTACACAAACTTGGTGGTTACCTTCCAGAGCATTGGAATAATATGCAGTTTGCAGACTTGGAAGTGGGTTATGATTATAGTTTCTTAAATCCTGATTATGATTTTGGCTTATTGGAAGAGCAGAAGTTACTTGATGTATGCTTTCCACAAGTAGGATCATAG 1413 0.414 MRGKGGPQNSDCKFRGVRQRIWGKWVAEIREPINGKLVGEKANRLWLGTFSTALEAALAYDEAAKAMYGPCARLNFPKPSVEPVESNGSSSSGCDKKSPSGSSENNGDVTKAELDRNLHQPHEEKPRLSEVGVFKVTEEKLVLSGSCVSVDSIEELKKMTTGFEQCQTSEECKELTLKNVKSEIPEESEGIEREMERVWKDSGIGEEGNLLQKEPVDIAMNTGANYCSSSDAAEHDVVEKHEETRGASVETLKSCELSCSNHCLGYIHNMLPDGNTRSHSEHFSNIQTEASIARKHTEEVISEILELCHSKCLKISHDQSPHEHYYKTEHLDEMRTKLKCLECKLRAHSIHYKSQAPIVGDSDYPSMQEIPMFGGGTVGPIESMSQVDAMNNINTNRNSLPGFSSGHSRKLCDLSQQLHKLGGYLPEHWNNMQFADLEVGYDYSFLNPDYDFGLLEEQKLLDVCFPQVGS* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01780 470 CDD AP2 12 77 IPR001471 GO:0003700|GO:0006355
Lapu1g01780 470 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Lapu1g01780 470 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Lapu1g01780 470 Pfam AP2 domain 12 69 IPR001471 GO:0003700|GO:0006355
Lapu1g01780 470 FunFam Ethylene-responsive transcription factor 2 12 78 - -
Lapu1g01780 470 Gene3D AP2/ERF domain 12 78 IPR036955 GO:0003700|GO:0006355
Lapu1g01780 470 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 219 - -
Lapu1g01780 470 MobiDBLite consensus disorder prediction 82 108 - -
Lapu1g01780 470 SUPERFAMILY DNA-binding domain 13 77 IPR016177 GO:0003677
Lapu1g01780 470 ProSiteProfiles AP2/ERF domain profile. 13 77 IPR001471 GO:0003700|GO:0006355
Lapu1g01780 470 MobiDBLite consensus disorder prediction 81 109 - -
Lapu1g01780 470 SMART rav1_2 13 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01780 Lapu-Chr1 30792919 30794517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01780 7 99 AP2-EREBP Transcription Factor Family AT5G05410 64.516 6.10e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lapu1g01780 AP2 3.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01780 - - gmx:100500303 693.73