Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01769 ATGGGAGGCTGTTGCAGCCATGATGTTTCTGTTCGAGGGAAGGTGGAAAGCGAGATGGATGATAGAGAATATGAGTATGATCATGAAAATGATGTGTCTTATGAACGTGGCGGATCATTGGTGAGGTTCAGAGGATCCTCCAAGTTTGTTTCAATGTACACCCAACAGGGCCAGAAAGGTGTGAACCAAGATGCAATGACAGTTTGGGAGGACTACACAGGAGAAAAGGATGTGATATTTTGTGGTGTGTTCGATGGTCATGGTCCTCTAGGCCACAAGGTTTCACAGTTTATTCGTGACAATCTGCCCTCAAAACTGTCTGCAGCAATCGAAATTTCACAACAGAAGACAATAAAATTTTATGATGCCAATGATGCAGAAACTGCTAGTTTTGATGATGGCTACGATGACAGTAACCACGGCATGTCCCTTGCTTCATGGGAGGGATGCTTTCTGAAATCCTTTGATGAGATGGATGAGTACCTTGCTCGAGAAATTAACACTGACAGCTATTGCAGTGGTTGCACCGCTGTGACTTTAATTAAACAGGGTGACCAGCTTATAGTTGGCAATTTGGGTGATTCTCGTGCAGTTCTTTGCACAAAGGACAGCGACCAACTCGTTGCTGTTCAACTCACTGTTGACTTGAAACCAGAAATTCCAAGTGAAACATCAAGAATCGTTAACTGTGAAGGAAGAGTGTTTGCAGCAGAAGAAGAACCAGATGTGTACAGAATATGGATGCCTGATGATGACTGCCCTGGACTAGCCATGTCAAGAGCCTTTGGGGACTTTTGCCTCAAAGATTATGGCCTCATATCAGCTCCTGACGTATTTTACAGAAAACTTACCCCACAAGATCAATTTGTGATTTTGGCAACTGATGGGATATGGGATGTGCTCACTAACCATGAAGTAATAAGCATAGTTGCTTCAGCACCAAGGAGGTCCATCGCAGCCAAGTTGTTAGTAAAGCGTGCTGTAAGAGCCTGGAGATACAAATATCCTGGTTCCAAGGTTGATGATTGTGCTGCCATATGCTTGTTTCTGGATGAACAATCTGTTCCATCCCATTCACAATCCCATATGAATAGAAAAAATAGACCACGCAGCAAGCACTTGCATCGCTCTAAAACCACTAGAAATGAAGACACTGAAACAGTGGATGGCAAGGTTGGGATGGAAATAGATGAAGAATGGAAAGCTCTTGGAGGGTTTTCAAGAGCCAACTCTTTATCAAAACTTCCACGCCTTGCCAGGGGTATGAGTAAACGGCAATCGTCCAGGTACTATTCACCGCGTTGA 1305 0.4391 MGGCCSHDVSVRGKVESEMDDREYEYDHENDVSYERGGSLVRFRGSSKFVSMYTQQGQKGVNQDAMTVWEDYTGEKDVIFCGVFDGHGPLGHKVSQFIRDNLPSKLSAAIEISQQKTIKFYDANDAETASFDDGYDDSNHGMSLASWEGCFLKSFDEMDEYLAREINTDSYCSGCTAVTLIKQGDQLIVGNLGDSRAVLCTKDSDQLVAVQLTVDLKPEIPSETSRIVNCEGRVFAAEEEPDVYRIWMPDDDCPGLAMSRAFGDFCLKDYGLISAPDVFYRKLTPQDQFVILATDGIWDVLTNHEVISIVASAPRRSIAAKLLVKRAVRAWRYKYPGSKVDDCAAICLFLDEQSVPSHSQSHMNRKNRPRSKHLHRSKTTRNEDTETVDGKVGMEIDEEWKALGGFSRANSLSKLPRLARGMSKRQSSRYYSPR* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01769 434 ProSiteProfiles PPM-type phosphatase domain profile. 49 350 IPR001932 -
Lapu1g01769 434 PANTHER PROTEIN PHOSPHATASE 47 348 IPR015655 GO:0004722|GO:0006470
Lapu1g01769 434 SUPERFAMILY PP2C-like 45 351 IPR036457 -
Lapu1g01769 434 Gene3D - 43 352 IPR036457 -
Lapu1g01769 434 CDD PP2Cc 49 350 IPR001932 -
Lapu1g01769 434 SMART PP2C_4 40 348 IPR001932 -
Lapu1g01769 434 MobiDBLite consensus disorder prediction 358 390 - -
Lapu1g01769 434 MobiDBLite consensus disorder prediction 414 434 - -
Lapu1g01769 434 Pfam Protein phosphatase 2C 73 327 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01769 Lapu-Chr1 30703389 30706850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01769 1 356 PP2C-type Phosphatase Gene Family AT5G01700 52.528 1.69e-131 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01769 - - vun:114185420 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01769 1 30703389 30706850 Lapu1g01769 1 30703389 30706850 ECH
Lapu1g01769 1 30703389 30706850 Lapu10g01292 10 17557913 17560203 PCT