Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01745 ATGCAACCAAGAACAAGTATTGGAGATGGTTTTCGTGTTAGTGTGTCGAGTACACCTAGTGTTTCAAGTGCAGGATCAGGACCAGATGACATAGAATCACTAGGTGATGTTTATGTATGGGGAGAGGTTTGGGCAGATGGGGTTTCACATGATGGATTTGTTACTCAAGCCCCTGCTACAACAGATGTATTGATTCCCAAACCATTGGAGTCAAGTGTTGTTCTCGATGTTCAACAAATTGCATCTGGTATGCGACACATTGCTTTAGTAACAAGGCAAGGGGAGGTTTTTACATGGGGAGAAGAATCTGGGGGAAGACTCGGTCATGGAATTGATAGAGATTTTGGTCGCCCTCATCTAGTTGAGTTTTTGGCAGTTACAAATATGGATATTGTTGCTTGTGGAGAGAATCATACATGTGCTGTTTCTACATCTGATGATCTTTTCTCATGGGGTGATGGTACATATAATGTTGGACTTCTTGGACATGGAACTGATGTTAGCCATTGGATACCAAAGAAGGTTAGTGGTGCTCTAGAAGGACTTCAAGTTATATCTATAGCATGTGGCACATGGCATTCAGCACTAGCAACATCTAATGGAAAACTCTTTACCTTTGGTGATGGAACATTTGGTGTGTTGGGTCATGGAAATAGACAAAGTGTGTCATATCCAAAAGAGGTACAGTTATTAAGTGGATTGAAAACTATTAAGGTTTCATGCGGAGTATGGCATACTGCAGCCATTGTAGAGGTCACTTTTCAATCTGGTTCAAATGTTTTATCCAGAAAGCTTTTCACTTGGGGAGATGGTGACAAATATCGTTTGGGACATGGAAACAAGGAAACATACCTTCAACCCACTTGTGTCTCTACACTTATAGAATATAATTTCCACCAAATAGCATGTGGACACACTATGACTGTTGCCCTCACTACTTCTGGTCATATCTTCACTATGGGAAACGCTGAAAATGGTCAATTAGGGAATCCTTTAGCTGATGGAAAAGTACCTATCTTAGTTCAAGATAAGTTAGTAGGTGAATTTGTTGAAGAAATATCATGTGGATCTCATCATGTTGCGGCCTTAACATCAAGAAGTGAACTATATACTTGGGGGAAAGGTGCTAATGGAAGATTGGGACATGGAGACATAGAAGACAGAAAGCTTCCAACATTAGTGGAATCCTTGAAAGATAGACATGTAAAGAATATTTCATGTGGCTCAAACTTTACATCTTGCATATGCATTCATAAATGGGTATCTGGAGTTGACCAATCTATTTGCACTGGTTGTAGACAACCATTTGGTTTCACTAGGAAGAGACATAATTGTTATAACTGTGGATTAGTGCATTGTCATGGTTGTAGTTCAAGAAAGGTACTAAAAGCAGCGTTAGCTCCAACACCAGGAAAACCCCATCGTGTGTGTGACTCTTGTTATAATAAGCTTAAAGCTGTTGAGGCAAGTGCTAGTGCAAATCTCAATAGAAAAATTACTACTGCACCTCGCACTTCCATGGATTCCAGGGAAAGAGTAGGCCACGTAGAAGTAAAGTCTTCAAGACTTATTTTGCCTCCAATCACAGAACCAGTAAAATATCATCAAATGTTGACTAATAAGCTGGGAAGCAAATATGATTATTGTTCCCTGTCTCCATCTTCTCAAATTCCATCACTTCTACAATTGAATGATATTGCATTTCCAAATTCAATGAACTCCTCTCCAAATGTTTTGAAGCATGCTATATCTCCTAATCCACCACCAGTGTCACCTACCATTGGAAGACCATCATCTCCTTATGCAAGAAGGCCAAGTTCACCACGTTCTCGAAATCCAGGATTTTCTAGAAGTCTTATTGAAAGTTTGAAGAAGTCGAATGAACTTCTAAATCAAGAAGTTTCAAAGTTGCAAAAGCAGATACGAAGTTTGAAGCTAAAAAATGACACGGAAATTGGAAAGCTTCAGAAAAATGTTAGGGAAGTTACCTCCTTTGCTGTAGAGGAATCTTCTAAGCATAAAACTATGCGAGAGTTTTTTGAGTCTACCATAGATCAGTTGAAGGAAATGATCGAGAAATTGCCACCAGAAGCTTTAGATAGTGAAAATTGGAAAACGGTACTTACTGGAGCTGAAGATTTTCTGAGAGATAATTCAGAATCTGAAATACCATCCATGTCACCAAGTGTGAAGTCTAAGCAACAAAATCTTCCTAATACACTTCACTCTAAATTGCAAGGACATAAAATAGAAGAAAATAATGAAACTGAATACTCGTCGTCACGAGATGAAGGACATGTTCTTCAAGAAAGTAATAGCTCATCTTTATCAAACAATGAAGCATCAATGACTTCACAAAACTCTCTAAATTATTCAAAATCCCATGATTCTTCAAGATCAAGTAAAGAAGGAGAAACACAAGTCATTGAACAATTTGAACCTGGCGTATATGTAACATTAACCGTAAAGCCTACTGGTGTCAGGAGTTTCAAACGGGTTAGATTCAGTAAACGAAGGTTCCATGAACATCAAGCAGAAGAATGGTGGAACAAAAACAAAGATAGGGTGCTTAAGAAATATAGTACTTTAGCAGCTACAAGTTCTGAAGGTTCTGGGTCATCTAACACTCTACCACCACCACCTTCAGAAGAAAATATTGAGGCAATGTCTTCCTAA 2676 0.3868 MQPRTSIGDGFRVSVSSTPSVSSAGSGPDDIESLGDVYVWGEVWADGVSHDGFVTQAPATTDVLIPKPLESSVVLDVQQIASGMRHIALVTRQGEVFTWGEESGGRLGHGIDRDFGRPHLVEFLAVTNMDIVACGENHTCAVSTSDDLFSWGDGTYNVGLLGHGTDVSHWIPKKVSGALEGLQVISIACGTWHSALATSNGKLFTFGDGTFGVLGHGNRQSVSYPKEVQLLSGLKTIKVSCGVWHTAAIVEVTFQSGSNVLSRKLFTWGDGDKYRLGHGNKETYLQPTCVSTLIEYNFHQIACGHTMTVALTTSGHIFTMGNAENGQLGNPLADGKVPILVQDKLVGEFVEEISCGSHHVAALTSRSELYTWGKGANGRLGHGDIEDRKLPTLVESLKDRHVKNISCGSNFTSCICIHKWVSGVDQSICTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVLKAALAPTPGKPHRVCDSCYNKLKAVEASASANLNRKITTAPRTSMDSRERVGHVEVKSSRLILPPITEPVKYHQMLTNKLGSKYDYCSLSPSSQIPSLLQLNDIAFPNSMNSSPNVLKHAISPNPPPVSPTIGRPSSPYARRPSSPRSRNPGFSRSLIESLKKSNELLNQEVSKLQKQIRSLKLKNDTEIGKLQKNVREVTSFAVEESSKHKTMREFFESTIDQLKEMIEKLPPEALDSENWKTVLTGAEDFLRDNSESEIPSMSPSVKSKQQNLPNTLHSKLQGHKIEENNETEYSSSRDEGHVLQESNSSSLSNNEASMTSQNSLNYSKSHDSSRSSKEGETQVIEQFEPGVYVTLTVKPTGVRSFKRVRFSKRRFHEHQAEEWWNKNKDRVLKKYSTLAATSSEGSGSSNTLPPPPSEENIEAMSS* 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01745 891 ProSiteProfiles BRX domain profile. 806 861 IPR013591 -
Lapu1g01745 891 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 80 90 IPR000408 -
Lapu1g01745 891 Pfam FYVE zinc finger 419 485 IPR000306 GO:0046872
Lapu1g01745 891 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 20 679 - -
Lapu1g01745 891 MobiDBLite consensus disorder prediction 1 29 - -
Lapu1g01745 891 Gene3D - 259 430 IPR009091 -
Lapu1g01745 891 Gene3D - 14 258 IPR009091 -
Lapu1g01745 891 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 239 249 IPR000408 -
Lapu1g01745 891 Pfam Regulator of chromosome condensation (RCC1) repeat 368 415 IPR000408 -
Lapu1g01745 891 Pfam Regulator of chromosome condensation (RCC1) repeat 265 311 IPR000408 -
Lapu1g01745 891 Pfam Regulator of chromosome condensation (RCC1) repeat 94 142 IPR000408 -
Lapu1g01745 891 Pfam Regulator of chromosome condensation (RCC1) repeat 200 249 IPR000408 -
Lapu1g01745 891 Pfam Regulator of chromosome condensation (RCC1) repeat 147 196 IPR000408 -
Lapu1g01745 891 Pfam Regulator of chromosome condensation (RCC1) repeat 314 363 IPR000408 -
Lapu1g01745 891 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 263 314 IPR000408 -
Lapu1g01745 891 SMART fyve_4 417 486 IPR000306 GO:0046872
Lapu1g01745 891 MobiDBLite consensus disorder prediction 742 807 - -
Lapu1g01745 891 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 94 145 IPR000408 -
Lapu1g01745 891 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 423 485 IPR017455 -
Lapu1g01745 891 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 431 491 IPR013083 -
Lapu1g01745 891 Pfam Transcription factor BRX N-terminal domain 668 703 IPR027988 -
Lapu1g01745 891 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 146 200 IPR000408 -
Lapu1g01745 891 Pfam Transcription factor regulating root and shoot growth via Pin3 806 860 IPR013591 -
Lapu1g01745 891 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 201 252 IPR000408 -
Lapu1g01745 891 SUPERFAMILY RCC1/BLIP-II 35 420 IPR009091 -
Lapu1g01745 891 MobiDBLite consensus disorder prediction 745 764 - -
Lapu1g01745 891 MobiDBLite consensus disorder prediction 1 27 - -
Lapu1g01745 891 SUPERFAMILY FYVE/PHD zinc finger 419 490 IPR011011 -
Lapu1g01745 891 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 367 418 IPR000408 -
Lapu1g01745 891 CDD FYVE_like_SF 429 481 - -
Lapu1g01745 891 Coils Coil 620 647 - -
Lapu1g01745 891 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 315 366 IPR000408 -
Lapu1g01745 891 MobiDBLite consensus disorder prediction 578 616 - -
Lapu1g01745 891 MobiDBLite consensus disorder prediction 862 891 - -
Lapu1g01745 891 PRINTS Chromosome condensation regulator RCC1 signature 203 217 IPR000408 -
Lapu1g01745 891 PRINTS Chromosome condensation regulator RCC1 signature 304 322 IPR000408 -
Lapu1g01745 891 PRINTS Chromosome condensation regulator RCC1 signature 146 162 IPR000408 -
Lapu1g01745 891 PRINTS Chromosome condensation regulator RCC1 signature 76 89 IPR000408 -
Lapu1g01745 891 PRINTS Chromosome condensation regulator RCC1 signature 187 203 IPR000408 -
Lapu1g01745 891 PRINTS Chromosome condensation regulator RCC1 signature 362 383 IPR000408 -
Lapu1g01745 891 FunFam PH, RCC1 and FYVE domains-containing protein 1 6 254 - -
Lapu1g01745 891 MobiDBLite consensus disorder prediction 765 795 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01745 Lapu-Chr1 30417920 30428535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01745 803 861 Major Intrinsic Protein MIP AT1G31880 38.983 1.37e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01745 - - gmx:100776643 1431.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01745 1 30417920 30428535 Lapu10g01328 10 18958958 18966048 PCT