Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01731 ATGCAAAAAGTGCTGCAAAAAATGGAACAGAAAGGAAGTGTGCTTATGCAAAGATATGAACTTGGTAGATTATTAGGCCAAGGGACCTTTGCAAAAGTCTACCATGCTAGGAATCTGATAACAGGCATGAGTGTGGCCATTAAGGTAATTGATAAGGAAAAAGTTTTGAAAGTCGGAATGGTTGATCAGATTAAGCGTGAAGTTTCAGTGATGAGATTAATCAGACACCCACATGTGGTTGAGCTTTATGAGGTAATGGCCACTAAAACCAAAATTTACTTTGCCATGGATCATGCTAAAGGTGGTGAGCTCTTCAATAAGTTACTTAAAGGAAGGCTCAAGGTTGATGTTGCTAGGAAATATTTTCAGCAACTGATTAGTGCTGTTGACTACTGCCATAGCAGGGGTGTGTGTCATCGAGACTTGAAGCCTGAAAATATACTTTTGGATGAAAATGAGAATTTGATGGTTTCAGACTTTGGGTTGAGTGCCCTTGCTGAATGCAAGCACCAAGATGGATTGCTCCATACTACATGTGGTACCCCTGCCTATGTTGCTCCAGAAGTGATAAGCAGAAAGGGTTATGATGGGATGAAAGCAGATATATGGTCATGTGGGGTAATCTTGTTTGTTATGTTGGCTGGTCATCTTCCATTCCATGATTCAAATCTGATGGAGATGTACAGGAAAATTAGGAAAGCAGAATTAAAATTTCCTAAATGGTTTGCACCAGATGCTCGCCGGTTATTGGCCAGGATATTGGATCCAAACCCAAATACCAGGATATCAATTGCCAGGATTATGAAATGTTCTTGGTTTAAAGTGGGGTTGGAGAAGCCTGCTATTACTGCAACCGAAAACCAAGAACTAGCTCCCCTGCATGCTGATGGAATATTTGAAGCGTGCGAGAATGATGGTCCACCTATTGCAGAGTCAAAGCATGAACTGACCAAGCCTTGTAACTTAAATGCTTTTGCTATTATCTCCTTCTCAACTGGTGTTGATTTATCTGGTATGTTCGACGACACTCTTCTGAAGAAAGAGAAGCGGTTCATGTCAAACAAGCCTGCTTCCAATATAATCACTAAGTTGGAAGAAATTTGTAACCGGCTTTCCTTGAAAGTAAGGAAGAAAGATGGAGGCTTGTTCAAGTTTGAAGGTTCTAAGGAAGGCAGGAAAGGGACTTTAGGTGTTGATGCTGAGATTTTTGAGATTACCCCACACCTCCACATGGTGGAGCTTAGAAAGTCCAGTGGGGATACCATGGAGTACCAGAAGCTTTTTACACAGGATATTAGACCAGCACTTCAGGACATTGTTTGGACCTGGCAAGGAGAACAACCACAGCAAGAGCAACAGCATCATGAAGCAGTTCAGGAAGAGCACCAACCTTGTCACACCATTTCTTAA 1410 0.417 MQKVLQKMEQKGSVLMQRYELGRLLGQGTFAKVYHARNLITGMSVAIKVIDKEKVLKVGMVDQIKREVSVMRLIRHPHVVELYEVMATKTKIYFAMDHAKGGELFNKLLKGRLKVDVARKYFQQLISAVDYCHSRGVCHRDLKPENILLDENENLMVSDFGLSALAECKHQDGLLHTTCGTPAYVAPEVISRKGYDGMKADIWSCGVILFVMLAGHLPFHDSNLMEMYRKIRKAELKFPKWFAPDARRLLARILDPNPNTRISIARIMKCSWFKVGLEKPAITATENQELAPLHADGIFEACENDGPPIAESKHELTKPCNLNAFAIISFSTGVDLSGMFDDTLLKKEKRFMSNKPASNIITKLEEICNRLSLKVRKKDGGLFKFEGSKEGRKGTLGVDAEIFEITPHLHMVELRKSSGDTMEYQKLFTQDIRPALQDIVWTWQGEQPQQEQQHHEAVQEEHQPCHTIS* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01731 469 SUPERFAMILY Protein kinase-like (PK-like) 15 274 IPR011009 -
Lapu1g01731 469 SMART serkin_6 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01731 469 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01731 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Lapu1g01731 469 ProSiteProfiles NAF domain profile. 317 341 IPR018451 GO:0007165
Lapu1g01731 469 FunFam Non-specific serine/threonine protein kinase 317 441 - -
Lapu1g01731 469 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 436 - -
Lapu1g01731 469 Gene3D Kinase associated domain 1, KA1 321 442 - -
Lapu1g01731 469 MobiDBLite consensus disorder prediction 446 469 - -
Lapu1g01731 469 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Lapu1g01731 469 Pfam NAF domain 319 377 IPR004041 GO:0007165
Lapu1g01731 469 FunFam Non-specific serine/threonine protein kinase 10 98 - -
Lapu1g01731 469 FunFam Non-specific serine/threonine protein kinase 13 314 - -
Lapu1g01731 469 Gene3D Transferase(Phosphotransferase) domain 1 10 320 - -
Lapu1g01731 469 ProSiteProfiles Protein kinase domain profile. 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01731 469 CDD CIPK_C 323 437 - -
Lapu1g01731 469 CDD STKc_SnRK3 18 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01731 Lapu-Chr1 30246166 30250301 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01731 8 449 CBL-interacting serine-threonine protein kinases AT5G58380 64.114 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lapu1g01731 Pkinase 6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01731 K07198 - gmx:100811923 788.875