Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01724 ATGGGTAACTACAGGTTCAAATTATCAGATATGATCCCCAATGCCTGGTTTTACAAACTCAAGGACATGGGAAAAGCAAGAAAGCAAACCCCAACTCTGTCCAAGAAGAAAAAACAACCTTCACCAGCCTCAACCACACAACCATCAAAACCAAAGCAACCCCACCATTTCAATCCCAGAAAGTCTTACTACTTCACAAGGGAGCTTAACACAAATGATAGAATCTACTCCTCACCAGCAAATAACCAAAATGCCAAATACAACAATTCCCCTGAAGCCCCCAGAAAATCATCCAAACAAAGACTCAAGAGAAGAACCGCAAGGACTTCTTCACCTAAGCTTGTTGCCACTAACAATGACAACTCCTCGTCACCACATGATACGTCTGCTGAGTCAGAGTACCCTGACCCAGAGTTCAGAACAGACCGTGTTCTTGCCACTGAAGCATTAGATGAAACGGTTTCTTGGTCCAACTCTCGTGCCTGCAAGCTACACTCCAACGCCAAGGACATCATCATTGATGTAGACAACAATTCCATAGAAAGAAAAGACGATAAGCTAGAAGGGTATGAATATGATTCCTTCTCAGACCTTGTGCTTCCACCAATTATGACCAAGCCTGCAAAATTCGATGACTTGCTGAGTGATGCCAAGAAGAAAGAAAGAAAAACCAAAAGCAAAATGGCTGCACAGGAAGAACCAGACTTGAAGGGGCCTCTTAGAGTTAAAATTGTGAAGGAAGGTAATGCACCAATGAAGGAACATAAGAACACCCCTGGTAGGAGATTCTCTGTGAGTTCTTCTCCAGGAGTGAGGCTTCGGATGAACTCACCGCGAATTGCCAGCCGGAAAATTCAGGCACATGGCCGGAGAAGCGTGTCGTCTGCCGCAGGCTCCGGCTCCAGGAGAAGCCTCTCAGATAGCTTTGCAATTGTGAAATCATCACTGAATCCACAGAGGGACTTCAGAGAATCAATGGTGGAGATGATTGTGCAGAACAACATAAGGACGTCAAAGGATTTAGAGGATCTTCTTGCTTGCTATCTTTCTCTTAATTCAGATGAGTATCATGACCTCATTATCAAAGTGTTCAAGCAAATATGGTTTGATTTAACTGATAATTAG 1125 0.4373 MGNYRFKLSDMIPNAWFYKLKDMGKARKQTPTLSKKKKQPSPASTTQPSKPKQPHHFNPRKSYYFTRELNTNDRIYSSPANNQNAKYNNSPEAPRKSSKQRLKRRTARTSSPKLVATNNDNSSSPHDTSAESEYPDPEFRTDRVLATEALDETVSWSNSRACKLHSNAKDIIIDVDNNSIERKDDKLEGYEYDSFSDLVLPPIMTKPAKFDDLLSDAKKKERKTKSKMAAQEEPDLKGPLRVKIVKEGNAPMKEHKNTPGRRFSVSSSPGVRLRMNSPRIASRKIQAHGRRSVSSAAGSGSRRSLSDSFAIVKSSLNPQRDFRESMVEMIVQNNIRTSKDLEDLLACYLSLNSDEYHDLIIKVFKQIWFDLTDN* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01724 374 NCBIfam uncharacterized plant-specific domain TIGR01568 310 372 IPR006458 -
Lapu1g01724 374 ProSiteProfiles OVATE domain profile. 311 370 IPR006458 -
Lapu1g01724 374 MobiDBLite consensus disorder prediction 25 60 - -
Lapu1g01724 374 MobiDBLite consensus disorder prediction 288 302 - -
Lapu1g01724 374 MobiDBLite consensus disorder prediction 74 95 - -
Lapu1g01724 374 MobiDBLite consensus disorder prediction 74 138 - -
Lapu1g01724 374 MobiDBLite consensus disorder prediction 35 53 - -
Lapu1g01724 374 Pfam DNA-binding domain 1 41 IPR025830 GO:0003677
Lapu1g01724 374 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 66 372 IPR038933 GO:0045892
Lapu1g01724 374 MobiDBLite consensus disorder prediction 110 130 - -
Lapu1g01724 374 Pfam Transcriptional repressor, ovate 315 371 IPR006458 -
Lapu1g01724 374 MobiDBLite consensus disorder prediction 251 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01724 Lapu-Chr1 30155368 30156492 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lapu1g01724 Ovate 2.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01724 - - gmx:100794572 590.882