Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01713 ATGACGCAGCGGCGGTTTCTGGAGAGGGAGCTCAGCATGCCACCGTCGTACGGCAACAACACGCGCGACACGTTCATCAGCGACGCGAACTTCGACACCAACATGGTGATCATTCTGGCGGCGCTGCTATGCGCACTCATATGCGCGCTGGGGCTGAACTCCATCGCGCGGTGCGCGCTGCGGTGCGGGCGGCGCTTCGGCGACGAGACGGCCGAGCAGGCGGCGGCGCGCCTGGCGGGGACGGGGCTGAAGCGGCGTCAGCTTAGTCGCATCCCGGTGGCGGTGTATGGTGCCTCCGGCGAGACCATCCCTGCGACAGAGTGCCCCATATGCCTCGGGGAGTTCGAGAAAGGGGACAGGGTTCGAATGCTGCCCAAATGCAACCACGGCTTCCACGTCCACTGCATTGACACATGGCTCTTGTCCCACTCCTCCTGCCCCAACTGCCGCCACTCCCTCCTCGAGAAACCCGCCGCGCCGGAGAGTGGGTCCCGACGGAGGAGCGACGTCGTGGTGGTGGTGGAGCCGCCGAGTTGA 537 0.6611 MTQRRFLERELSMPPSYGNNTRDTFISDANFDTNMVIILAALLCALICALGLNSIARCALRCGRRFGDETAEQAAARLAGTGLKRRQLSRIPVAVYGASGETIPATECPICLGEFEKGDRVRMLPKCNHGFHVHCIDTWLLSHSSCPNCRHSLLEKPAAPESGSRRRSDVVVVVEPPS* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01713 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 158 IPR013083 -
Lapu1g01713 178 SUPERFAMILY RING/U-box 101 157 - -
Lapu1g01713 178 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Lapu1g01713 178 SMART ring_2 108 149 IPR001841 -
Lapu1g01713 178 CDD RING-H2_EL5-like 107 150 - -
Lapu1g01713 178 PANTHER RING-H2 FINGER PROTEIN ATL78 19 158 IPR044602 GO:0016567|GO:0016740
Lapu1g01713 178 Pfam Ring finger domain 107 150 IPR001841 -
Lapu1g01713 178 SMART FANCL_C_2 104 157 - -
Lapu1g01713 178 MobiDBLite consensus disorder prediction 157 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01713 Lapu-Chr1 30046876 30048571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01713 5 174 C3H Transcription Factor Family AT3G10910 55.056 4.30e-60 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01713 K19040 - gmx:100814602 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01713 1 30046876 30048571 Lapu1g01713 1 30046876 30048571 ECH