Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01678 ATGGAACCCAGCAGCGCAGACGCTTTCCGACCTTCTTCTTCTCCCTCATCTTCCCCCAACTCCAGGCGAATTTCAGGGATTTTGTCACCCTCCAATATCATTCAGGCGCCGTTATCGGCGCTCTTGGAATATTCCGGCATCCTTCCGTCGCGCTCCTCTAACCACCACAGCCAGGCCTCCCCCGACGCCGTTGACAATGACGGCGAGGTTTCGATTAGAATAATCGGCCCCGCGGAGCAGGAGCAGCACCCTCGAGACGAGCAACAGAGCCCTTCTCCCGCTGCGGGATTGGTCGTTGGACTCGCGCATTCGCAAAACGACGCCGTGTTGCCCTCGGCGTCGCCTCGCAGCGATGCCGCTGAGGAAAGCGCCGTCCCCTCCGGGGATGGCGTTGGGAGAGACTCGTCTTACCAGAGATACGATATTCAGCATGCTGCCAGGTGGATTGAGCAGGTCTTGCCGTTTTCGTTGCTTCTCTTGGTTGTTTTCATAAGGCAGCATTTGCAAGGATTTTTTGTGACAATTTGTATTGCGGCTGTGCTTTTCAAGTCGAATGATATTCTGAGGAAACAGACTGCGTTGAAGGGAGAGAGGAAAATACCGGTTTTGATTGGGATTTCTGTTGGGTTCGCGCTTCATGTGGTTGTTGTTTATTGGTGGTATCAGAATGATGATCTCATGTATCCCTTGATCATGCTTCCTCCCAAGGATATACCACCTTTCTGGCATGCCATTTTCATCATCATGGTCAATGATACTTTGGTCCGTCAAGCTGCAATGGTATTCAAGTGTATATTGTTGATGTATTACAAGAATAGCAGAGGCCGAAATTATCGTAAGCAGGGTCAAATGCTGACTTTAGTTGAATATCTCCTTCTGCTTTACCGTGCCTTGTTGCCAACACCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAAGCCTCTTTTCGTCACTGATGACAGGATTGTATTTAACATTCAAACTCACGTCTGTTGTTGAAAAGGTGCAATCCTTCTTTGCTGCAGTGAAGGCATTGTCACGTAAAGAAATGCACTATGGGGCTTATGCAACATCAGAGCAGGTCAATGCAGCCGGTGATCTCTGTGCTATTTGTCAGGAGAAGATGCATGCCCCAATCTTACTACGTTGTAAACATATTTTCTGTGAAGACTGCGTATCAGAGTGGTTTGAGAGAGAAAGGACCTGTCCATTGTGCAGGGCTTTGGTAAAACCTGCAGACCTTAGGTCATTTGGGGATGGCTCCACTAGCTTGTTTTTCCAGTTATTCTGA 1296 0.4846 MEPSSADAFRPSSSPSSSPNSRRISGILSPSNIIQAPLSALLEYSGILPSRSSNHHSQASPDAVDNDGEVSIRIIGPAEQEQHPRDEQQSPSPAAGLVVGLAHSQNDAVLPSASPRSDAAEESAVPSGDGVGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTICIAAVLFKSNDILRKQTALKGERKIPVLIGISVGFALHVVVVYWWYQNDDLMYPLIMLPPKDIPPFWHAIFIIMVNDTLVRQAAMVFKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEMHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF* 432
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01678 431 MobiDBLite consensus disorder prediction 1 26 - -
Lapu1g01678 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 344 418 IPR013083 -
Lapu1g01678 431 CDD RING-HC_RNFT1-like 368 408 - -
Lapu1g01678 431 ProSiteProfiles Zinc finger RING-type profile. 370 408 IPR001841 -
Lapu1g01678 431 MobiDBLite consensus disorder prediction 7 26 - -
Lapu1g01678 431 SMART ring_2 370 407 IPR001841 -
Lapu1g01678 431 Pfam Zinc finger, C3HC4 type (RING finger) 368 411 - -
Lapu1g01678 431 ProSitePatterns Zinc finger RING-type signature. 385 394 IPR017907 -
Lapu1g01678 431 MobiDBLite consensus disorder prediction 109 133 - -
Lapu1g01678 431 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 17 431 IPR044235 GO:0061630|GO:1904294
Lapu1g01678 431 SUPERFAMILY RING/U-box 362 413 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lapu1g01678 Lapu-Chr1 29686947 29691269 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01678 11 431 C3H Transcription Factor Family AT5G01960 72.471 0.0 629
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01678 - K22379 gmx:100818546 725.317
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01678 1 29686947 29691269 Lapu1g01678 1 29686947 29691269 ECH