Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu1g01678 | ATGGAACCCAGCAGCGCAGACGCTTTCCGACCTTCTTCTTCTCCCTCATCTTCCCCCAACTCCAGGCGAATTTCAGGGATTTTGTCACCCTCCAATATCATTCAGGCGCCGTTATCGGCGCTCTTGGAATATTCCGGCATCCTTCCGTCGCGCTCCTCTAACCACCACAGCCAGGCCTCCCCCGACGCCGTTGACAATGACGGCGAGGTTTCGATTAGAATAATCGGCCCCGCGGAGCAGGAGCAGCACCCTCGAGACGAGCAACAGAGCCCTTCTCCCGCTGCGGGATTGGTCGTTGGACTCGCGCATTCGCAAAACGACGCCGTGTTGCCCTCGGCGTCGCCTCGCAGCGATGCCGCTGAGGAAAGCGCCGTCCCCTCCGGGGATGGCGTTGGGAGAGACTCGTCTTACCAGAGATACGATATTCAGCATGCTGCCAGGTGGATTGAGCAGGTCTTGCCGTTTTCGTTGCTTCTCTTGGTTGTTTTCATAAGGCAGCATTTGCAAGGATTTTTTGTGACAATTTGTATTGCGGCTGTGCTTTTCAAGTCGAATGATATTCTGAGGAAACAGACTGCGTTGAAGGGAGAGAGGAAAATACCGGTTTTGATTGGGATTTCTGTTGGGTTCGCGCTTCATGTGGTTGTTGTTTATTGGTGGTATCAGAATGATGATCTCATGTATCCCTTGATCATGCTTCCTCCCAAGGATATACCACCTTTCTGGCATGCCATTTTCATCATCATGGTCAATGATACTTTGGTCCGTCAAGCTGCAATGGTATTCAAGTGTATATTGTTGATGTATTACAAGAATAGCAGAGGCCGAAATTATCGTAAGCAGGGTCAAATGCTGACTTTAGTTGAATATCTCCTTCTGCTTTACCGTGCCTTGTTGCCAACACCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAAGCCTCTTTTCGTCACTGATGACAGGATTGTATTTAACATTCAAACTCACGTCTGTTGTTGAAAAGGTGCAATCCTTCTTTGCTGCAGTGAAGGCATTGTCACGTAAAGAAATGCACTATGGGGCTTATGCAACATCAGAGCAGGTCAATGCAGCCGGTGATCTCTGTGCTATTTGTCAGGAGAAGATGCATGCCCCAATCTTACTACGTTGTAAACATATTTTCTGTGAAGACTGCGTATCAGAGTGGTTTGAGAGAGAAAGGACCTGTCCATTGTGCAGGGCTTTGGTAAAACCTGCAGACCTTAGGTCATTTGGGGATGGCTCCACTAGCTTGTTTTTCCAGTTATTCTGA | 1296 | 0.4846 | MEPSSADAFRPSSSPSSSPNSRRISGILSPSNIIQAPLSALLEYSGILPSRSSNHHSQASPDAVDNDGEVSIRIIGPAEQEQHPRDEQQSPSPAAGLVVGLAHSQNDAVLPSASPRSDAAEESAVPSGDGVGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTICIAAVLFKSNDILRKQTALKGERKIPVLIGISVGFALHVVVVYWWYQNDDLMYPLIMLPPKDIPPFWHAIFIIMVNDTLVRQAAMVFKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEMHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF* | 432 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu1g01678 | 431 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Lapu1g01678 | 431 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 344 | 418 | IPR013083 | - | |
Lapu1g01678 | 431 | CDD | RING-HC_RNFT1-like | 368 | 408 | - | - | |
Lapu1g01678 | 431 | ProSiteProfiles | Zinc finger RING-type profile. | 370 | 408 | IPR001841 | - | |
Lapu1g01678 | 431 | MobiDBLite | consensus disorder prediction | 7 | 26 | - | - | |
Lapu1g01678 | 431 | SMART | ring_2 | 370 | 407 | IPR001841 | - | |
Lapu1g01678 | 431 | Pfam | Zinc finger, C3HC4 type (RING finger) | 368 | 411 | - | - | |
Lapu1g01678 | 431 | ProSitePatterns | Zinc finger RING-type signature. | 385 | 394 | IPR017907 | - | |
Lapu1g01678 | 431 | MobiDBLite | consensus disorder prediction | 109 | 133 | - | - | |
Lapu1g01678 | 431 | PANTHER | UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN | 17 | 431 | IPR044235 | GO:0061630|GO:1904294 | |
Lapu1g01678 | 431 | SUPERFAMILY | RING/U-box | 362 | 413 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu1g01678 | Lapu-Chr1 | 29686947 | 29691269 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu1g01678 | 11 | 431 | C3H Transcription Factor Family | AT5G01960 | 72.471 | 0.0 | 629 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lapu1g01678 | - | K22379 | gmx:100818546 | 725.317 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lapu1g01678 | 1 | 29686947 | 29691269 | Lapu1g01678 | 1 | 29686947 | 29691269 | ECH |