Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01676 ATGGCTGCGAATTCCGGGAATATCTCATTTGCATCATCGCAATCTAGTTCACAGGCACATGGGGATACTGATTCTGTGCAGGTTGCAGTGTGTTCTCTTTGTCAAAAGGCCCTATCACATGATAATGAGATGGCAAGCGATCTAGCCAGCAGTGGTGTGTGCGGTGATTGTAAGTTTTTGTTACTTGAAGACTTTGGGAATCATACAGTTACCCAAAGTTCACGAAGGAGGCTTAGAGGAAGATTCAGGCACTACAGTTCTGAATCCATGGATAATAATTTCTCACAGCAGATTCCACATGTGGTTAGTACCGTGAGACAATATCAATCACCTGCCTCTGGGGAGGATGATCAACTTGTAGATGGTGACACATCTGCTTGGTCAATGCAATATGCTAGTACGCACACTACCCCTAGTGGGTCTAGAAGGTGGAGGCATGTTCTCTCTGACACTGACAGTGATGGATTTGATAATTGGACTTCTCTTTATGGTGAAAATGAATCAAGTGTGAGTTTTAGACGGTACAGGGTTCCCCATGGTGAGACAGATTCTTTCTCTAACAGTGCTTATGGAGGTGACTCAGATATTTCTATGGATACTCATAGTTTTGTAGGCACTGGAGTCTTTAATTTACCAGATGAGGGAGATGATTTCGATAGTGACACTGACATTGATCCAATGCATGCTGGCCACGGCCAATGGGTTTCAGATGAAGATGAAGATGAAGATGGGGAGGAGGAGGAGGAGGAGGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGATAGGGAATGGGAATTAGCTGAGGCTGAGGAAGCTGAAGCCACAGCCCGCCTTCAAATTTTTTTCACCTCAAGTCCAAGTGAGAGCAGGGATCGCATTAATTGGGAACAGAGGTTTAATTCTACAGAATCTGAGGGAATGTTTAGCCAGATAATCAGGGATACCTGGCAAGCTTTTGAGGATGCTGATTTACCTCATGGAGCAAACTTTGGGGATTATCTTGATGCTAGACGTTTTGAAGACCTGCTTGAGCATCTTGCTGAGAATGACAGCTCAAGACGAGGAGCACCTCCTGCTGCTGTGTCTTTCATGAATAATCTGCCACGTGTAGTCATTGGCAAAGAACATGAGAAGCATGGTGAACTACTTTGTGCCATTTGCAAGGATGTCTTGGCACCTGGCACTGAAGTAAATCAACTTCCCTGCTCTCACCTTTATCACATCGATTGCATTTTGCCATGGTTGAGTGCACGAAATTCATGCCCTCTTTGTCGTTATGAGCTTCCAACCGATGATAAGGATTATGAAGAGGGAAAGCAGAACATTGATGGTAGAAATGTTATCCATGAGAGGCAGCAAATAGACGTAACAGATAGTTCCTCTGATGTTTCTGATGGAGATGAGGTGAATGAAGAGAATGGTAGTAGTCAAGATGAAATTCGGCAGAGGGATGTTAGCTCAGGTTCTACCGCAATTTCTTCTACAAGAAGTGGCAGAGGAAGATGGTTTTTTCTTGCTGCGGCTCCAATTGTTAGTTTAGTGGGCATTGTTCTTGTATTGTGGTTAGGCAATAACTCTGAAATTGAAGGAAATAGACATCTGGGAAGTCATTACTTATCGGGGCAAAATCAACATGCCGTCCATGCTTATGCCTCTCCAAACCAGAGGGAGAGTAGAAGCAGAAGATGGTGGTGCCCGTTTTAA 1746 0.441 MAANSGNISFASSQSSSQAHGDTDSVQVAVCSLCQKALSHDNEMASDLASSGVCGDCKFLLLEDFGNHTVTQSSRRRLRGRFRHYSSESMDNNFSQQIPHVVSTVRQYQSPASGEDDQLVDGDTSAWSMQYASTHTTPSGSRRWRHVLSDTDSDGFDNWTSLYGENESSVSFRRYRVPHGETDSFSNSAYGGDSDISMDTHSFVGTGVFNLPDEGDDFDSDTDIDPMHAGHGQWVSDEDEDEDGEEEEEEGEEEEEEEEEEEEEEEEEEEEEEEDREWELAEAEEAEATARLQIFFTSSPSESRDRINWEQRFNSTESEGMFSQIIRDTWQAFEDADLPHGANFGDYLDARRFEDLLEHLAENDSSRRGAPPAAVSFMNNLPRVVIGKEHEKHGELLCAICKDVLAPGTEVNQLPCSHLYHIDCILPWLSARNSCPLCRYELPTDDKDYEEGKQNIDGRNVIHERQQIDVTDSSSDVSDGDEVNEENGSSQDEIRQRDVSSGSTAISSTRSGRGRWFFLAAAPIVSLVGIVLVLWLGNNSEIEGNRHLGSHYLSGQNQHAVHAYASPNQRESRSRRWWCPF* 582
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01676 581 MobiDBLite consensus disorder prediction 494 509 - -
Lapu1g01676 581 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 250 443 - -
Lapu1g01676 581 SUPERFAMILY RING/U-box 379 445 - -
Lapu1g01676 581 Pfam Ring finger domain 398 439 IPR001841 -
Lapu1g01676 581 MobiDBLite consensus disorder prediction 468 509 - -
Lapu1g01676 581 MobiDBLite consensus disorder prediction 212 282 - -
Lapu1g01676 581 CDD RING-H2_PA-TM-RING 398 439 - -
Lapu1g01676 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 358 445 IPR013083 -
Lapu1g01676 581 MobiDBLite consensus disorder prediction 1 21 - -
Lapu1g01676 581 Coils Coil 241 286 - -
Lapu1g01676 581 MobiDBLite consensus disorder prediction 236 282 - -
Lapu1g01676 581 FunFam E3 ubiquitin-protein ligase RING1-like isoform A 358 445 - -
Lapu1g01676 581 SMART ring_2 398 438 IPR001841 -
Lapu1g01676 581 ProSiteProfiles Zinc finger RING-type profile. 398 439 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lapu1g01676 Lapu-Chr1 29663533 29667001 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01676 13 581 C3H Transcription Factor Family AT5G01980 42.132 4.02e-118 357
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01676 - - pvu:PHAVU_008G078700g 965.296
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01676 1 29663533 29667001 Lapu1g01676 1 29663533 29667001 ECH