Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu1g01676 | ATGGCTGCGAATTCCGGGAATATCTCATTTGCATCATCGCAATCTAGTTCACAGGCACATGGGGATACTGATTCTGTGCAGGTTGCAGTGTGTTCTCTTTGTCAAAAGGCCCTATCACATGATAATGAGATGGCAAGCGATCTAGCCAGCAGTGGTGTGTGCGGTGATTGTAAGTTTTTGTTACTTGAAGACTTTGGGAATCATACAGTTACCCAAAGTTCACGAAGGAGGCTTAGAGGAAGATTCAGGCACTACAGTTCTGAATCCATGGATAATAATTTCTCACAGCAGATTCCACATGTGGTTAGTACCGTGAGACAATATCAATCACCTGCCTCTGGGGAGGATGATCAACTTGTAGATGGTGACACATCTGCTTGGTCAATGCAATATGCTAGTACGCACACTACCCCTAGTGGGTCTAGAAGGTGGAGGCATGTTCTCTCTGACACTGACAGTGATGGATTTGATAATTGGACTTCTCTTTATGGTGAAAATGAATCAAGTGTGAGTTTTAGACGGTACAGGGTTCCCCATGGTGAGACAGATTCTTTCTCTAACAGTGCTTATGGAGGTGACTCAGATATTTCTATGGATACTCATAGTTTTGTAGGCACTGGAGTCTTTAATTTACCAGATGAGGGAGATGATTTCGATAGTGACACTGACATTGATCCAATGCATGCTGGCCACGGCCAATGGGTTTCAGATGAAGATGAAGATGAAGATGGGGAGGAGGAGGAGGAGGAGGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGATAGGGAATGGGAATTAGCTGAGGCTGAGGAAGCTGAAGCCACAGCCCGCCTTCAAATTTTTTTCACCTCAAGTCCAAGTGAGAGCAGGGATCGCATTAATTGGGAACAGAGGTTTAATTCTACAGAATCTGAGGGAATGTTTAGCCAGATAATCAGGGATACCTGGCAAGCTTTTGAGGATGCTGATTTACCTCATGGAGCAAACTTTGGGGATTATCTTGATGCTAGACGTTTTGAAGACCTGCTTGAGCATCTTGCTGAGAATGACAGCTCAAGACGAGGAGCACCTCCTGCTGCTGTGTCTTTCATGAATAATCTGCCACGTGTAGTCATTGGCAAAGAACATGAGAAGCATGGTGAACTACTTTGTGCCATTTGCAAGGATGTCTTGGCACCTGGCACTGAAGTAAATCAACTTCCCTGCTCTCACCTTTATCACATCGATTGCATTTTGCCATGGTTGAGTGCACGAAATTCATGCCCTCTTTGTCGTTATGAGCTTCCAACCGATGATAAGGATTATGAAGAGGGAAAGCAGAACATTGATGGTAGAAATGTTATCCATGAGAGGCAGCAAATAGACGTAACAGATAGTTCCTCTGATGTTTCTGATGGAGATGAGGTGAATGAAGAGAATGGTAGTAGTCAAGATGAAATTCGGCAGAGGGATGTTAGCTCAGGTTCTACCGCAATTTCTTCTACAAGAAGTGGCAGAGGAAGATGGTTTTTTCTTGCTGCGGCTCCAATTGTTAGTTTAGTGGGCATTGTTCTTGTATTGTGGTTAGGCAATAACTCTGAAATTGAAGGAAATAGACATCTGGGAAGTCATTACTTATCGGGGCAAAATCAACATGCCGTCCATGCTTATGCCTCTCCAAACCAGAGGGAGAGTAGAAGCAGAAGATGGTGGTGCCCGTTTTAA | 1746 | 0.441 | MAANSGNISFASSQSSSQAHGDTDSVQVAVCSLCQKALSHDNEMASDLASSGVCGDCKFLLLEDFGNHTVTQSSRRRLRGRFRHYSSESMDNNFSQQIPHVVSTVRQYQSPASGEDDQLVDGDTSAWSMQYASTHTTPSGSRRWRHVLSDTDSDGFDNWTSLYGENESSVSFRRYRVPHGETDSFSNSAYGGDSDISMDTHSFVGTGVFNLPDEGDDFDSDTDIDPMHAGHGQWVSDEDEDEDGEEEEEEGEEEEEEEEEEEEEEEEEEEEEEEDREWELAEAEEAEATARLQIFFTSSPSESRDRINWEQRFNSTESEGMFSQIIRDTWQAFEDADLPHGANFGDYLDARRFEDLLEHLAENDSSRRGAPPAAVSFMNNLPRVVIGKEHEKHGELLCAICKDVLAPGTEVNQLPCSHLYHIDCILPWLSARNSCPLCRYELPTDDKDYEEGKQNIDGRNVIHERQQIDVTDSSSDVSDGDEVNEENGSSQDEIRQRDVSSGSTAISSTRSGRGRWFFLAAAPIVSLVGIVLVLWLGNNSEIEGNRHLGSHYLSGQNQHAVHAYASPNQRESRSRRWWCPF* | 582 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu1g01676 | 581 | MobiDBLite | consensus disorder prediction | 494 | 509 | - | - | |
Lapu1g01676 | 581 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 250 | 443 | - | - | |
Lapu1g01676 | 581 | SUPERFAMILY | RING/U-box | 379 | 445 | - | - | |
Lapu1g01676 | 581 | Pfam | Ring finger domain | 398 | 439 | IPR001841 | - | |
Lapu1g01676 | 581 | MobiDBLite | consensus disorder prediction | 468 | 509 | - | - | |
Lapu1g01676 | 581 | MobiDBLite | consensus disorder prediction | 212 | 282 | - | - | |
Lapu1g01676 | 581 | CDD | RING-H2_PA-TM-RING | 398 | 439 | - | - | |
Lapu1g01676 | 581 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 358 | 445 | IPR013083 | - | |
Lapu1g01676 | 581 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Lapu1g01676 | 581 | Coils | Coil | 241 | 286 | - | - | |
Lapu1g01676 | 581 | MobiDBLite | consensus disorder prediction | 236 | 282 | - | - | |
Lapu1g01676 | 581 | FunFam | E3 ubiquitin-protein ligase RING1-like isoform A | 358 | 445 | - | - | |
Lapu1g01676 | 581 | SMART | ring_2 | 398 | 438 | IPR001841 | - | |
Lapu1g01676 | 581 | ProSiteProfiles | Zinc finger RING-type profile. | 398 | 439 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu1g01676 | Lapu-Chr1 | 29663533 | 29667001 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu1g01676 | 13 | 581 | C3H Transcription Factor Family | AT5G01980 | 42.132 | 4.02e-118 | 357 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lapu1g01676 | - | - | pvu:PHAVU_008G078700g | 965.296 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lapu1g01676 | 1 | 29663533 | 29667001 | Lapu1g01676 | 1 | 29663533 | 29667001 | ECH |