Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01666 ATGTCTTCTTATTCCTTCCTCTTCATTCTCCTTGTCTTAATCAATTTTGCAACCACCAAAGCAGAAGATCCACCCTTCGTCTTCCGATTTTGCTCCGACAACACCACCAACACCACTTACAAAACAAACCTCAAGACCCTCTTTTCCACCTTAGCTTCCAAAGCCGCCATCAGAAATTTTCACAACGACACAGTTAAAAACACAGTTTTTGGTTTGTACATGTGCAGGGGCGACATGCCCTCTAACCTCTGCTCCCAATGCGTCAAAAATGCCTCAAACACACTAACCTCGGACCCAGAATGTTCCCTCTCCAAACAAGCCTTAATCTGGTACGATGAGTGCATGGTACGCTACTCCAACGTCTCGTTCTTCTCCACCGTCGCCACCGAACCCAACGTATGCACATTCAACAATGCGAAAATCTCCAACAACGTGACCTCCTTCAAGAACATCTTATCAAAAACAATGAAACAAACCATACGCGAAGCAGTGAACTCCCCCACAGAGAGCTGGTACGCAACGAAGCAGCAAAACGTGTTCGAAACTCAGACGCTATACTGTGTGGCGCAGTGCACCATGGACCTCTCCCGTCAAGATTGCGCCAGGTGTCTCGCCAACGCCACAAACATGGTTCCGCAATGCTGTGGAGATAACCTAGGAGGAAGAGTTCTGCTTCCTAGCTGCAACGTTAGGTTTGAATTATACCCTTTCATCCGTTTCCACAGTTTTTTCAGCTCAAACGGAATATCACTCGTTCCGGAAACGAGATATCGCTATCCACTATCAGATCCAGAATATTCCGGATACATCTCTCACAACTGTAGTAGCTACGTTCAGACTCTTCAAAACGACGACGTTGTTTCGTTTAGGTCAAACCTCATGACTCTTCTACAATACCTGACTTCCAACGCCACCAACGGCACGGAGTTTCAGGCGCAAGTTGGAGCTCTGCGCGGTCTCTTCATGTGCCGCGGCGACGTCGCGGAGCGTGTCGTTTGCGGCGAGTGCGTGCGGAACGCGTCGGAAAGAGTGCTTTCGGCTTGTCGTTTTGCGAGGGAGGGTGTAGTTTGGTTCGAGTACTGTTTGGTTCGGTATTCGGATCGGGATTTTGTGTCCAGAGTGGAGACGACGCCGAGGTATGAGATTCTGAACGTAACGAGTGGCGCAGCGAGCGTTGAAGAGATTGCGTTTACTTTGGGGACGAGCTTGGCTAGCATTGCCAACCGAACAGGGGACAGTGGCATCAGGTACCGAAACACGACGGCGAAATTGAACGACGAGCAGACGCTATATATTGCGGCGCAATGCACGCGCGACTTGTCCAGCCACGATTGCAGCGCGTGCTTGAGCGATGTGATTGGATCGGCGATTCCATGGAGGCTTTTGGGAAGCGTTGGTGGAAGAGTTTTGTATCCGAGCTGCGTTCTCAGGTTAGAAGTGTTTCAGTTTCTGAACAATTGGGTGGCTCCGCCGCCGCCACCGCCGTCACGACCACTGCTGCAGCCTGGTATTCGTCATCCTACAGAAACAGGAAATGTTCGGCCACACAAAATTGTCTTGTTTGTTGTTTCCGGTGTTATCGTTCCAGTTATACTTTTCTCTTTTGCATGTTTCTTGACACGAAGAAAAGCAAAGAATTGCAAAACCATTCTCAAGGAAAATTTTGGACATGAAAGTACTGCCGTAGAGCCATTGCAATTTGATTTGGCTATAATCAAAGCAGCAACAAACAACTTTTCACATGAAAACAAGATTGGCAAAGGTGGATTTGGAGAAGTTTACAAGGGCATTCTTATTGATGGAAGACATATTGCTGTGAAAAGACTGTCTAGAACTTCAAAACAGGGTGCACAAGAGTTTAAAAATGAAGTGTTATTAATAGCAAAGCTCCAACATAGAAATCTTGTAGAATTCATTGGATTTTGCCTCAACGAAGAAGAAAAAATACTTATCTATGAATATGTTTCAAACAAGAGTTTGGATCACTTCTTATTTGATTTTGGTCTTGCTAGAATTGTTGAAATGGATCAACAAGAAGGAAGTACAAATAGAATTATTGGAACTTTTGGATATATGTCTCCAGAATATGTAATGTTTGGACAATTTTCCGATAAATCGGATGTCTATAGCTTTGGCGTTATGGTATTAGAGATTATTACAGGGAAAAAGAATGGAGCTTCTTATGAATCCTATGATGTTGTTGATGGTCTTCTAAGTTTTGTTTGGAGACAATGGATAGACCATACACCATTAAACATATTGGACTCAAAATTGGTAAAGAATTATTCAAAGATTGAAGTCATTAAGTGCATTCAAATAGGTTTATTATGTGTTCAAGAAAATCCTGATATTAGACCTACAATGTTAACAATTATTTCATATCTTAACAATCACTTAATGGAATTGCCACTTCCTTTAGAACCACCGTTTATCTTGTATAGTAAAATGAATAGAAGAATAGTTGCTTATGAATGTAGTTCTAGTCAATCCGCCAACAATTCAACATCATTCTCTATCAATGAAATGTCTGTAAGTGAATTCTATCCTCGATAG 2553 0.4344 MSSYSFLFILLVLINFATTKAEDPPFVFRFCSDNTTNTTYKTNLKTLFSTLASKAAIRNFHNDTVKNTVFGLYMCRGDMPSNLCSQCVKNASNTLTSDPECSLSKQALIWYDECMVRYSNVSFFSTVATEPNVCTFNNAKISNNVTSFKNILSKTMKQTIREAVNSPTESWYATKQQNVFETQTLYCVAQCTMDLSRQDCARCLANATNMVPQCCGDNLGGRVLLPSCNVRFELYPFIRFHSFFSSNGISLVPETRYRYPLSDPEYSGYISHNCSSYVQTLQNDDVVSFRSNLMTLLQYLTSNATNGTEFQAQVGALRGLFMCRGDVAERVVCGECVRNASERVLSACRFAREGVVWFEYCLVRYSDRDFVSRVETTPRYEILNVTSGAASVEEIAFTLGTSLASIANRTGDSGIRYRNTTAKLNDEQTLYIAAQCTRDLSSHDCSACLSDVIGSAIPWRLLGSVGGRVLYPSCVLRLEVFQFLNNWVAPPPPPPSRPLLQPGIRHPTETGNVRPHKIVLFVVSGVIVPVILFSFACFLTRRKAKNCKTILKENFGHESTAVEPLQFDLAIIKAATNNFSHENKIGKGGFGEVYKGILIDGRHIAVKRLSRTSKQGAQEFKNEVLLIAKLQHRNLVEFIGFCLNEEEKILIYEYVSNKSLDHFLFDFGLARIVEMDQQEGSTNRIIGTFGYMSPEYVMFGQFSDKSDVYSFGVMVLEIITGKKNGASYESYDVVDGLLSFVWRQWIDHTPLNILDSKLVKNYSKIEVIKCIQIGLLCVQENPDIRPTMLTIISYLNNHLMELPLPLEPPFILYSKMNRRIVAYECSSSQSANNSTSFSINEMSVSEFYPR* 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01666 850 ProSiteProfiles Gnk2-homologous domain profile. 376 483 IPR002902 -
Lapu1g01666 850 Gene3D - 26 123 IPR038408 -
Lapu1g01666 850 Gene3D - 130 237 IPR038408 -
Lapu1g01666 850 Gene3D - 380 483 IPR038408 -
Lapu1g01666 850 Gene3D - 268 370 IPR038408 -
Lapu1g01666 850 Gene3D Phosphorylase Kinase; domain 1 540 649 - -
Lapu1g01666 850 Pfam Protein tyrosine and serine/threonine kinase 666 793 IPR001245 GO:0004672|GO:0006468
Lapu1g01666 850 Pfam Protein tyrosine and serine/threonine kinase 582 664 IPR001245 GO:0004672|GO:0006468
Lapu1g01666 850 ProSiteProfiles Protein kinase domain profile. 579 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01666 850 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 156 666 - -
Lapu1g01666 850 ProSiteProfiles Gnk2-homologous domain profile. 129 237 IPR002902 -
Lapu1g01666 850 Pfam Salt stress response/antifungal 414 479 IPR002902 -
Lapu1g01666 850 Pfam Salt stress response/antifungal 282 367 IPR002902 -
Lapu1g01666 850 Pfam Salt stress response/antifungal 31 120 IPR002902 -
Lapu1g01666 850 Pfam Salt stress response/antifungal 134 235 IPR002902 -
Lapu1g01666 850 FunFam Cysteine-rich receptor-like protein kinase 25 131 237 - -
Lapu1g01666 850 SUPERFAMILY Protein kinase-like (PK-like) 562 828 IPR011009 -
Lapu1g01666 850 ProSiteProfiles Gnk2-homologous domain profile. 22 123 IPR002902 -
Lapu1g01666 850 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 540 654 - -
Lapu1g01666 850 ProSiteProfiles Gnk2-homologous domain profile. 269 370 IPR002902 -
Lapu1g01666 850 ProSitePatterns Protein kinases ATP-binding region signature. 585 607 IPR017441 GO:0005524
Lapu1g01666 850 Gene3D Transferase(Phosphotransferase) domain 1 650 799 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01666 Lapu-Chr1 29544834 29548194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01666 262 850 Receptor kinase-like Gene Family AT4G05200 36.842 6.49e-126 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu1g01666 PK_Tyr_Ser-Thr 3.6e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01666 - - gmx:100806248 1047.73