Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01665 ATGGGAAACTGCGGAACCAGAGAGGAATCTGCCGTAGTTTCCAACGCCCAAGTTCAGCAGCTTCACCATGCGACGTCGTCCTTGGGCGCCAGTGCGAGGAGTCAGAATGCCGGTAGCGAGAAGAAGCACGGTCACGGTCACAGGCACAATCTGAGTGAGTGCGCTTCGGATCTGAGCGAAGCGTGTTCAACACCGCGCGGTAACAATAGCAACAACACGCACGTGATATCGTTCACGCTCTACGAGTTGGAGACCATAACGAAGAGCTTCCGCGGAGACTACATCCTCGGCGAGGGAGGGTTCGGCACCGTTTACAAAGGCTACATTGATGAGAATGTCAGAGTGGGACTCAAATCGCTCCCTGTAGCGGTTAAGGTTCTGAACAAGGAAGGATTACAGGGACATCGAGAGTGGCTTACGGAAGTGAATTTTCTAGGGCAGCTTAGGCATCCTAATCTGGTGAAGTTGATTGGGTACTGCTGTGAAGATGATCATAGGTTGCTTGTATACGAGTTCATGTTCCGAGGGAGTTTGGAAAATCACTTATTCCGAAAGGCAACTGTCCCTTTATCATGGGCTACGAGAATGATGATTGCTTTTGGAGCTGCCAAAGGACTGGCATTTCTCCACAATGCTGAAAGGCCGGTGATCTACCGTGACTTCAAAACGTCTAATATATTATTGGACTCGGATTATACAGCAAAGCTTTCTGATTTTGGACTAGCTAAAGCAGGACCACAAGGTGACGAAACCCATGTATCCACTCGAGTCATGGGTACATATGGTTATGCTGCCCCTGAATACGTAATGACTGGCCACCTGACGGCTAGGAGTGACGTCTATAGCTTTGGTGTTGTTCTTTTGGAGCTCTTAACGGGAAGGAAATCTGTTGACAAGACCAGACCGGGCAAGGAACAGAGCTTGGTAGATTGGGCAAGGCCAAAGCTAAATGACAAGAGAAAGCTGCTACAAATAATTGATCCCAGATTGGAGAATCAATACTCAGTGAGGGCTGCACAAAAAGCATGTAGCTTGGCTTATTACTGTTTAAGTCAAAATCCCAAAGCAAGGCCGCTAATGAGCGATGTCGTTGAGACATTGGAACCCTTGCAAAGTTCCACTGTTGGTGCAGGTGAAGTCTCATTATCTGGATCAAATAGTGTGAGTGCTGGGCCTTTTGCCATGAACAAAATCTCTGACTACCGTATGCGTCAAAGGTTCTCAAACAATGTTGGTCCTGGTGCTACTTGTCGATCTCCAAACCCAAATTGTTCACCAGGTGCCCCAGCAACTCTACGGGTGAGATGA 1308 0.4817 MGNCGTREESAVVSNAQVQQLHHATSSLGASARSQNAGSEKKHGHGHRHNLSECASDLSEACSTPRGNNSNNTHVISFTLYELETITKSFRGDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATVPLSWATRMMIAFGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPGKEQSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSSTVGAGEVSLSGSNSVSAGPFAMNKISDYRMRQRFSNNVGPGATCRSPNPNCSPGAPATLRVR* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01665 435 Gene3D Phosphorylase Kinase; domain 1 54 172 - -
Lapu1g01665 435 MobiDBLite consensus disorder prediction 23 50 - -
Lapu1g01665 435 MobiDBLite consensus disorder prediction 412 435 - -
Lapu1g01665 435 ProSitePatterns Protein kinases ATP-binding region signature. 96 125 IPR017441 GO:0005524
Lapu1g01665 435 MobiDBLite consensus disorder prediction 412 426 - -
Lapu1g01665 435 Pfam Protein tyrosine and serine/threonine kinase 95 367 IPR001245 GO:0004672|GO:0006468
Lapu1g01665 435 FunFam Probable serine/threonine-protein kinase PBL8 173 385 - -
Lapu1g01665 435 CDD STKc_IRAK 96 370 - -
Lapu1g01665 435 SUPERFAMILY Protein kinase-like (PK-like) 70 368 IPR011009 -
Lapu1g01665 435 FunFam Serine/threonine-protein kinase BIK1 57 172 - -
Lapu1g01665 435 Gene3D Transferase(Phosphotransferase) domain 1 173 380 - -
Lapu1g01665 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Lapu1g01665 435 PANTHER OS01G0588500 PROTEIN-RELATED 45 371 - -
Lapu1g01665 435 MobiDBLite consensus disorder prediction 23 37 - -
Lapu1g01665 435 ProSiteProfiles Protein kinase domain profile. 90 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01665 Lapu-Chr1 29536740 29540802 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01665 70 380 Glycoside Hydrolase AT3G07070 52.548 5.81e-109 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lapu1g01665 PK_Tyr_Ser-Thr 5.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01665 - - gmx:102662348 841.262