Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01654 ATGGAAGGAAGAGAAGGGATGAGTTCTGGGGTTACAGTGATAGGAGCAGAAGCTCCATCAGCCTATCACATGGCACCAAGGAGTGAAGCTCCAAGTCATGGTGGTCCTCCTGCTCCTGAAGCACCAGCTGGAGCTATTGGTGTGTCGCCAGTGAGTTTGGGATTGGATGGAACATCAGTTAAGAAGAAAAGGGGCAGACCAAGAAAATATGGGCCAGATGGTTTGGTGCATATGACATTGTCACCCATGCCAATCTCATCTTCAGCACCATTTTCTACTGACTTTTCATCTGGGAAGCGTGGGAGACCCCGGGGGATGGATTACAAGCTGCCAAAGAAAGTTGGAGTGGATTATCTTGGTGGCTCTGATGGTACAAGCTTTATGCCCCATATCATTACTGTCAATAGTGGCGAGGACATAGCAATGAAGGTTATATCTTTTTCTCAACAAGGACCGCGTGCTATATGCATCTTATCTGCTAGTGGTGTGATTTCAAATGTTACACTGCGTCAGCCTGATTCTTCTGGGGGGACTTTGACCTATGAGGGCCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGAAAACCAAGGAACAAGAAGCAGGTCCGGAGGCATGAGTGTTTCGTTGTCGAGTCCAGATGGTCGCGTTGTAGGTGGTGGAGTTGCTGGTCTACTCGTAGCAGCAGGTCCTGTGCAGGTGGTGGTGGGAAGCTTTTTGCCATGCAACCAGCAAGATCAGAAACCAAAGAAGCCAAAGTCTGATCATGCACCAGCTACTGTTGCCCCTGTCATTGCTGTGTCTTCTGCACTATCCCCTACCAATGGTGAAAAGGAGGTTGTCATGGGTGGAAACATACTGCACAACTCAGGAACAACCCTTAATACAAACCTTGCTCCTCCCTCGGCCTTTCGCCGGGAAAGTTGGGTTAACATGCACTCTATGACAGACTCGATGAAGTCAGCTACTGATATTAACATATCCTTGCCTGATTGTTAA 1008 0.4802 MEGREGMSSGVTVIGAEAPSAYHMAPRSEAPSHGGPPAPEAPAGAIGVSPVSLGLDGTSVKKKRGRPRKYGPDGLVHMTLSPMPISSSAPFSTDFSSGKRGRPRGMDYKLPKKVGVDYLGGSDGTSFMPHIITVNSGEDIAMKVISFSQQGPRAICILSASGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRSGGMSVSLSSPDGRVVGGGVAGLLVAAGPVQVVVGSFLPCNQQDQKPKKPKSDHAPATVAPVIAVSSALSPTNGEKEVVMGGNILHNSGTTLNTNLAPPSAFRRESWVNMHSMTDSMKSATDINISLPDC* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01654 335 FunFam AT-hook motif nuclear-localized protein 1-like 129 260 - -
Lapu1g01654 335 ProSiteProfiles PPC domain profile profile. 124 265 IPR005175 -
Lapu1g01654 335 MobiDBLite consensus disorder prediction 87 107 - -
Lapu1g01654 335 SUPERFAMILY AF0104/ALDC/Ptd012-like 126 246 - -
Lapu1g01654 335 MobiDBLite consensus disorder prediction 1 75 - -
Lapu1g01654 335 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 242 IPR005175 -
Lapu1g01654 335 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 25 298 IPR039605 GO:0003680
Lapu1g01654 335 Gene3D - 129 257 - -
Lapu1g01654 335 CDD DUF296 129 219 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01654 Lapu-Chr1 29435392 29439921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01654 6 273 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 53.974 8.29e-90 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01654 - - gmx:100777213 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01654 1 29435392 29439921 Lapu1g01654 1 29435392 29439921 ECH
Lapu1g01654 1 29435392 29439921 Lapu10g01524 10 26247461 26253930 PCT