Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01644 ATGGCGACTCATCTTGCCGCAGCAAAGTCCAGCATGACGACGTCGTCTCAGGACAAACGACACCGTTCCATCTTCGATGTTCCGTCGGATTTCTTCCACTCTTCTCGCCTTCTCCCTTCCCCTCACTCTTCCGTTTCCGATAACCACACCGTAGGCCAAACCCAATCCCAGACACTTGAACCCTCCTCAAACGACGTCGTTATTCTCGATGATTCTCAAAACGCTGTCGTTTCCGCGCCTAGGTTGACCTGCAATACCTGCAGGACTCAGTTCGATTCCCTCCAAGACCAGCGTGCCCATTTCAAATCCGACATTCATCGCTTCAATGTGAAGCTGACAATTGCGGGAAAGAATACTGTGAAGGAAGAAGATTTTGAGGTGCTGACATCTGAATTTGTCAAAAACTATGATGTGTCAAGTATATCGGGATCAGAAAGCGACGAGGATAGTGAATCCGAGTCTCAAAGTCAAATTGTACTGCATGACAAATCGAGTGAAAATTTTAAACAGAAACTGTTCTTCCGTCTTCAGACAGGGCAGAGAGTTTCTGTCTGGAAGTGCTTGATTATGAATGTGACTGATAATGTATTGTATGATAATGAAAAGGCAGAGAATGATGTTGTTCAGAAGTTGAGATCTCTGACCGCTGAGCGCAGAGACAATACCCAGTTGAGGATTGTTCTTCTTGCATCTGGTGGGCACTTTGCAGGTTGTGTCTTTGATGGTGATGCTGTTGTGGCTCACAAGACATTTCACAGATACGTTGTAAGGGCCAAGGCAGGAAAAAAACAATCATCTAAAGATGCTTCTGGAAGGGCTGCGCATTCTGCTGGGGCCTCACTTCGTCGTTATAATGAACTTGCATTAAAGAAGGAAGTGCATGAACTGTTTACTGCTTGGAAACCTTATTTTGATGCCTCCAATTGCGTTTTTATACATGCACCTTCAAGTAGTCGTCAACTGCTTTATGATGGAGAAAGATCATATTTTGGCAATCAGCAGTGTGCTATTAGAAACATTGCTTTGAGTGTTCGGAGGCCTACTTTCAGGGAAGCAAAGCGTGTATATAGCCAGTTGACCCAGGTAACCTACGAAGCTGATGAGAAGGAAGTTTTACAAAGCAATCAAAAGGATTTGGTATCGGTTCACATTTCTAAAATAAATGGCAGTCCAACCTCCAGCCAAGGGAATGAGGCTGTGTTGGATGACAATGATAAACCTGAAGCTTGTTCTAGTAAACAGAATGATGAACACTCCATTTCAAGTAACGGAGAAAGTGAGAATGAGCTATCTGGTAAATCAACTCCTTTACATCAAGCAGCCCAATCTGGTGACTCTGTAAAGGTTTTGGAGCTTCTGGAACAGGGTTCGGATCCTTGCTCCAAAGATGAAAGGGGGCGGACTCCATATATGTTAGCACATGACAAAGAAGTGAGGAATAGTTTCAGAAGGTTTATGGCATCAAATCTTGACAAATGGGATTGGCATGCTGCAAAAGTGCCCAGTGCATTGACCAAAGAAATGGAAGAATCACAAGCTGCTAAGCAGGCAGAAAAAGATGCTAAGAGAAAAGCAAGAGCAAAAGAATTAAAGAAATTGAGGAAAGCAAAAGAAAAGAAGGCTCAGGTTGAAGCCACCTTGCCTAAGAATGACTCTAAAACTGTAGAGAAGCAAGTAGCTGCTTCAACATCGATAAAGGGACAATCTCAACTAAAAAGTGGCGTGCAATTATCCAAAGAGGACCAAATAAGAATGGCACAGGCTGCTGAAAGAGAAAAGCGAGCAGCTGCTGCCGAGAGGAGAATAGCTGCCCTCAAAATTCAAGCCAGCAGTAGCGTGTCAGAGCCTAAAAGTGGATTAGCCGGTGACATTTACTGTTCTTGTTGTAAGTCATCTCTTGCTGGTAAAGTTCCCTTCCACCGGTATAATTACAAATACTGCAGCACATCATGCATGCATGTACACAAGGAGATCCTAGAAGATCAGTGA 1989 0.4379 MATHLAAAKSSMTTSSQDKRHRSIFDVPSDFFHSSRLLPSPHSSVSDNHTVGQTQSQTLEPSSNDVVILDDSQNAVVSAPRLTCNTCRTQFDSLQDQRAHFKSDIHRFNVKLTIAGKNTVKEEDFEVLTSEFVKNYDVSSISGSESDEDSESESQSQIVLHDKSSENFKQKLFFRLQTGQRVSVWKCLIMNVTDNVLYDNEKAENDVVQKLRSLTAERRDNTQLRIVLLASGGHFAGCVFDGDAVVAHKTFHRYVVRAKAGKKQSSKDASGRAAHSAGASLRRYNELALKKEVHELFTAWKPYFDASNCVFIHAPSSSRQLLYDGERSYFGNQQCAIRNIALSVRRPTFREAKRVYSQLTQVTYEADEKEVLQSNQKDLVSVHISKINGSPTSSQGNEAVLDDNDKPEACSSKQNDEHSISSNGESENELSGKSTPLHQAAQSGDSVKVLELLEQGSDPCSKDERGRTPYMLAHDKEVRNSFRRFMASNLDKWDWHAAKVPSALTKEMEESQAAKQAEKDAKRKARAKELKKLRKAKEKKAQVEATLPKNDSKTVEKQVAASTSIKGQSQLKSGVQLSKEDQIRMAQAAEREKRAAAAERRIAALKIQASSSVSEPKSGLAGDIYCSCCKSSLAGKVPFHRYNYKYCSTSCMHVHKEILEDQ* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01644 662 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 14 661 IPR047139 -
Lapu1g01644 662 Gene3D - 397 499 IPR036770 -
Lapu1g01644 662 MobiDBLite consensus disorder prediction 533 555 - -
Lapu1g01644 662 MobiDBLite consensus disorder prediction 1 20 - -
Lapu1g01644 662 ProSiteProfiles Ankyrin repeat profile. 432 464 IPR002110 GO:0005515
Lapu1g01644 662 Coils Coil 579 608 - -
Lapu1g01644 662 Coils Coil 508 546 - -
Lapu1g01644 662 MobiDBLite consensus disorder prediction 414 442 - -
Lapu1g01644 662 ProSitePatterns Zinc finger C2H2 type domain signature. 84 106 IPR013087 -
Lapu1g01644 662 MobiDBLite consensus disorder prediction 386 443 - -
Lapu1g01644 662 Pfam Bacteroidetes VLRF1 release factor 226 364 IPR041175 -
Lapu1g01644 662 Pfam Vms1-associating treble clef domain 625 657 IPR041540 -
Lapu1g01644 662 ProSiteProfiles Ankyrin repeat region circular profile. 432 464 - -
Lapu1g01644 662 MobiDBLite consensus disorder prediction 386 400 - -
Lapu1g01644 662 MobiDBLite consensus disorder prediction 38 63 - -
Lapu1g01644 662 SUPERFAMILY Ankyrin repeat 434 485 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01644 Lapu-Chr1 29311526 29316500 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01644 19 614 C2H2 Transcription Factor Family AT1G01930 51.702 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01644 K26089 - gmx:100808912 1018.45