Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01642 ATGAGTTTCTTGCAGGGAATCATCGATTCCTTTAACTCCATCTTCGTTTCCGATAACAATCACAAAACCAATAATTCTCGTTCTCTTTCTTTTCGTTCTTCTTCTTCTTCAACGGATCGAATGGAAGCTCCTCCTCCTTCCGTCTCAAACGAGCGCGTGGCTTACAAGCTCAAAGGCTACTTCGATTTGGCGACGCAGGAGATCGCGAAGGCCGTTAGGGCCGAGGAATGGGGTTTGGTCGACGACGCGCTTCTTCACTACAGGAACGCGCAATCGATCCTCCTCGAAGCTAATTCAACTCCCGTTCCTTCCTACATCACTTCCAGTGAACAGCAGAAGGTGCAATCGTATCGTGAGAAGATAACCAAGTGGCAGAGTCAAATTTCTGAGAGATTGCAGACACTCGCTGGACGAGCTGGTAGCTCATCTGCCAAGCAGAGCACTGCTGCCGCACCGATTAAACCATTGGGTACTAGAAAAAATGTGTTACAAAAGCCCCCTCAAAGAACAGGTCAGGTGAATAAAGTTGGAAGCCCAAAATTGAGTCAAGCATCTGGTGCTAATCATGATACCAAACTAGTTGAAATGATTAACACTGCCATAGTAGATAGAAGTCCTTCTGTCAGATGGGAAGATGTTGCCGGGCTTGAAAAGGCAAAGCAAGCTTTAATGGAGATGGTTATTTTGCCAACTAAGAGAACAGACTTGTTTACGGGTCTTCGAAGGCCAGCCAGAGGTTTGCTTCTCTTTGGGCCACCTGGTAATGGAAAAACCATGCTTGCCAAAGCAGTGGCGTCAGAATCACAAGCAACATTTTTTAATGTCACGGCAGCTTCCTTGACATCAAAATGGGTGGGTGAAGGTGAAAAGCTTGTCCGGACACTATTCATGGTAGCTATATCAAAACAGCCATCTGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGTTGGCAAATGAGAATGATGCCAGCAGACGATTAAAATCCGAATTTCTTATCCAGTTTGATGGTGTGACCTCCAATCCTGATGATATTGTAATTGTAATTGGTGCGACAAATAAGCCACAAGAATTGGATGATGCAGTTCTTAGGAGACTGGTAAAGAGAATATACGTACCTTTACCAGATGAAAATGTTCGAAAGCTTCTGCTAAAAAACAAGCTCAAGGGTCAAGCATTCTCCTTACCTAGTAGAGATCTAGATAGGCTTGTAAAAGAGACAGAAGGATATTCTGGTAGTGATCTGCAAGCGTTGTGCGAAGAAGCTGCAATGATGCCAATTAGAGAGTTGGGTGCTGACATTCTTACTGTTAAGGCTAATCAGGTAAGAGGACTGAGGTACGAGGACTTTAAGAAGGCAATGGCTATAATTAGACCAAGCTTAAACAAAAGTAAATGGGAAGAGCTTAAGCGCTGGAATGAGGAATTTGGCTCTAATTGA 1449 0.4362 MSFLQGIIDSFNSIFVSDNNHKTNNSRSLSFRSSSSSTDRMEAPPPSVSNERVAYKLKGYFDLATQEIAKAVRAEEWGLVDDALLHYRNAQSILLEANSTPVPSYITSSEQQKVQSYREKITKWQSQISERLQTLAGRAGSSSAKQSTAAAPIKPLGTRKNVLQKPPQRTGQVNKVGSPKLSQASGANHDTKLVEMINTAIVDRSPSVRWEDVAGLEKAKQALMEMVILPTKRTDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVTAASLTSKWVGEGEKLVRTLFMVAISKQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPDENVRKLLLKNKLKGQAFSLPSRDLDRLVKETEGYSGSDLQALCEEAAMMPIRELGADILTVKANQVRGLRYEDFKKAMAIIRPSLNKSKWEELKRWNEEFGSN* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01642 482 CDD MIT_spastin 57 135 - -
Lapu1g01642 482 Gene3D - 49 138 - -
Lapu1g01642 482 ProSitePatterns AAA-protein family signature. 349 368 IPR003960 GO:0005524|GO:0016887
Lapu1g01642 482 FunFam AAA-type ATPase family protein 50 139 - -
Lapu1g01642 482 CDD RecA-like_spastin 212 375 - -
Lapu1g01642 482 MobiDBLite consensus disorder prediction 163 188 - -
Lapu1g01642 482 MobiDBLite consensus disorder prediction 23 47 - -
Lapu1g01642 482 Gene3D - 378 460 - -
Lapu1g01642 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 479 IPR027417 -
Lapu1g01642 482 SMART smart 57 134 IPR007330 -
Lapu1g01642 482 Gene3D - 206 476 IPR027417 -
Lapu1g01642 482 MobiDBLite consensus disorder prediction 23 44 - -
Lapu1g01642 482 FunFam AAA-type ATPase family protein 378 460 - -
Lapu1g01642 482 MobiDBLite consensus disorder prediction 135 149 - -
Lapu1g01642 482 FunFam Spastin, putative 206 391 - -
Lapu1g01642 482 PANTHER AAA DOMAIN-CONTAINING 72 481 - -
Lapu1g01642 482 Pfam ATPase family associated with various cellular activities (AAA) 247 377 IPR003959 GO:0005524|GO:0016887
Lapu1g01642 482 MobiDBLite consensus disorder prediction 135 188 - -
Lapu1g01642 482 SMART AAA_5 243 379 IPR003593 GO:0016887
Lapu1g01642 482 Pfam AAA+ lid domain 402 433 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01642 Lapu-Chr1 29291454 29297222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01642 188 432 Calmodulin-binding Proteins AT3G56690 41.339 1.09e-47 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01642 K13254 - gmx:100780946 831.247