Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01630 ATGGTGAGAGGAAAGACTCAGATGAGGCGCATAGAGAACGCCACAAGCAGGCAAGTTACCTTCTCAAAGCGGCGCAATGGGTTGCTGAAGAAGGCCTTTGAACTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTTATCATTTTCTCTCCAAGAGGAAAGCTTTATGAGTTTGCAAGCTCCAGCATGCAGGAGACAATTGAACGTTACCGCAGGCATAACAGGAGTGCCCAAACAGTGAACAGATCAGATGAGCAGAATATGCAGCATTTGAAGCAAGAAACAGCAAACTTGATGAAGAAGATTGAGCTACTTGAAGCTTCAAAACGGAAGCTCTTGGGAGAAAGCTTAGGTTCATGCTCCTTAGAAGAACTGCAACAGATAGAACAACAGTTGGAAAGGAGTGTAAGCAATGTTCGTGCAAGAAAGAATCAGGTTTACAAGGATCAAATTGAGCAACTAAAAGAAAAGGAAAGAACCCTATATGCTGAAAATGCCAGGCTGTGTGAGCAGTATGGTATCCAGCCACAACCAGGAACAAAGGACGTGAGAGAAAATAAACCCTATGCAGAAAGCAGTCCAAGTTCAGAAGTGGAGACTGAATTGTTCATTGGACTACCTAGGTCTAGTTTAACATAA 636 0.4324 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQETIERYRRHNRSAQTVNRSDEQNMQHLKQETANLMKKIELLEASKRKLLGESLGSCSLEELQQIEQQLERSVSNVRARKNQVYKDQIEQLKEKERTLYAENARLCEQYGIQPQPGTKDVRENKPYAESSPSSEVETELFIGLPRSSLT* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01630 211 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Lapu1g01630 211 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu1g01630 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lapu1g01630 211 SUPERFAMILY SRF-like 3 84 IPR036879 GO:0003677|GO:0046983
Lapu1g01630 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 176 - -
Lapu1g01630 211 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Lapu1g01630 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lapu1g01630 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lapu1g01630 211 FunFam MADS-box protein SOC1 14 95 - -
Lapu1g01630 211 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu1g01630 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu1g01630 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lapu1g01630 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu1g01630 211 Coils Coil 73 107 - -
Lapu1g01630 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lapu1g01630 211 Coils Coil 121 170 - -
Lapu1g01630 211 MobiDBLite consensus disorder prediction 172 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01630 Lapu-Chr1 29147988 29162284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01630 1 156 MADS-box Gene Family AT2G45660 77.564 3.76e-86 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lapu1g01630 K-box 1.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01630 - - gmx:100037477 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01630 1 29147988 29162284 Lapu10g00037 10 1760926 1782652 PCT