Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu1g01626 | ATGCCTCGTGGAACGCTTGAAGTTATTCTAATAAGCGCAAAAGACCTTCAGGAGAGTGATTTTTTGGGGAAAATGGATCCTTATGTGATTCTCACTTATCGCACTCAGGAGCACCGAAGCACTGTGGCTAAAGGTGCAGGATCTAAACCCCGTTGGAATGAAAGCTTTCTTTTCACTGTTTCTGACAGTGTCTCTAAACTTAATCTGAGGCTCATGGACAAGGATAGGTTAACCAGTGATGATTTTCTTGGCGAGACAAAAATTAATCTGGAAGCAGTGTTTGATGTGGGGAGCATTCCAGAAACTTCTTACAATGTTGTGAAGGACCAAAACTACTGTGGGGAGGTTAAGGTGGCACTCACCTTTAATCCTGAGTTGTGGTCGCATATTGGCTATCGAGAAGAATAA | 408 | 0.4289 | MPRGTLEVILISAKDLQESDFLGKMDPYVILTYRTQEHRSTVAKGAGSKPRWNESFLFTVSDSVSKLNLRLMDKDRLTSDDFLGETKINLEAVFDVGSIPETSYNVVKDQNYCGEVKVALTFNPELWSHIGYREE* | 136 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu1g01626 | 135 | PANTHER | C2 DOMAIN-CONTAINING | 1 | 123 | - | - | |
| Lapu1g01626 | 135 | Gene3D | C2 domain | 2 | 125 | IPR035892 | - | |
| Lapu1g01626 | 135 | SMART | C2_3c | 5 | 102 | IPR000008 | - | |
| Lapu1g01626 | 135 | Pfam | C2 domain | 4 | 98 | IPR000008 | - | |
| Lapu1g01626 | 135 | ProSiteProfiles | C2 domain profile. | 1 | 103 | IPR000008 | - | |
| Lapu1g01626 | 135 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 1 | 124 | IPR035892 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lapu1g01626 | Lapu-Chr1 | 29097253 | 29098936 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lapu1g01626 | 4 | 94 | C2H2 Transcription Factor Family | AT4G21160 | 30.769 | 1.22e-10 | 55.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu1g01626 | - | - | gmx:100814819 | 232.261 |