Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01619 ATGAATATGATGCGAAGGTTGAAAAGCATTGCTTCTGGGAGGACTTCCATTTCATCAGATCCTGGGGGTGATTGTACCACAAAGAGGCCTAAGTTTGATCAAGGAACAGAAGAAAAGGTCAATGAGGAAACATATTCTAATGAGAAATGCGGAGAAGATCAAGAGCAGTATGGAGATGCATCGACAGAAGGTGGTAATTCCAATGTTCCTACTACTAGATCTGAGAAGTCAAGTTATGATCAACTTCCAAAGGAATTAAATGAAATGAAAATTGGAGACGACAAAGGAAAAAACAACAATGAGAAGGATATGGAAGCAACTATTGTAAATGGTAATGGAACAGAAACAGGCCAAATAATTACAACTGCTATTGGTGGTCGAGATGGACAACCAAAGCGGACAATCTCATACATGGCGGAACGTGTAGTTGGCACTGGTTCTTTTGGTGTTGTTTATCAGGCCAAGTGCATTGAAACTGGTGAAGCAGTTGCCATAAAAAAAGTGCTGCAGGACAAGAGATATAAGAATAGGGAACTGCAGGTTATGCGTATACTTGACCATACTAATGTTCTCAGACTAAAGCACTGTTTCTATTCAGCAGCCGAGAAAGATGAGTTGTACCTTAACCTAGTTTTGGAGTATGTGCCTGAAACGGTCTACAGAGTTTCTAAGCACTATATCAGAATGCACCAACATATGCCTATCATTTATGTGCAACTGTATACATACCAGATATGTCGGGGTTTAAATTATTTGCATCATGTGATTGGAGTCTGTCACCGGGACGTCAAGCCCCAGAATCTATTGGTTAATCCCCAGAGTCATCAGTTAAAGATATGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGCGAACCCAACATATCATACATATGCTCGCGGTATTACAGAGCTCCAGAGCTTATATTTGGTGCAACAGAATACACAACTGCTATTGATATTTGGTCCGCTGGTTGTGTTATGGCTGAGCTTCTTCTAGGACATCCAATGTTTCCTGGGGAGAGCGGGGTTGATCAATTGGTTGAGATCATTAAGATCTTGGGAACACCAACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACAGAATTTAAGTTTCCTCAGATAAAAGCACACCCGTGGCATAAGGTTTTCCACAAGAAGATGCCAACAGAAGCAGTGGATCTAGTGTCGAGGATGCTTCAGTATTCACCAAATCTACGTTGCACTGCTTTGGAGGCTTGTGCACACCCGTTCTTTGATGATCTGCGAGACCCAAATGCATGCTTGCCAAATGGGCGACCACTCCCTCCGTTGTTTGATTTCACTGCACAAGATAACCACACCAGCAATGCTACTTTCCCTAACAGTCTAGGTCTCTGCTGTCCACCCTGCACAATCATGACTATTCAGCTCATAGGAACCTTAAAGCCATGCAACCTATTTGTCAAGGACTGGCAGGTGACAATCCCATGA 1479 0.4246 MNMMRRLKSIASGRTSISSDPGGDCTTKRPKFDQGTEEKVNEETYSNEKCGEDQEQYGDASTEGGNSNVPTTRSEKSSYDQLPKELNEMKIGDDKGKNNNEKDMEATIVNGNGTETGQIITTAIGGRDGQPKRTISYMAERVVGTGSFGVVYQAKCIETGEAVAIKKVLQDKRYKNRELQVMRILDHTNVLRLKHCFYSAAEKDELYLNLVLEYVPETVYRVSKHYIRMHQHMPIIYVQLYTYQICRGLNYLHHVIGVCHRDVKPQNLLVNPQSHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVMAELLLGHPMFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKKMPTEAVDLVSRMLQYSPNLRCTALEACAHPFFDDLRDPNACLPNGRPLPPLFDFTAQDNHTSNATFPNSLGLCCPPCTIMTIQLIGTLKPCNLFVKDWQVTIP* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01619 492 Pfam Protein kinase domain 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01619 492 MobiDBLite consensus disorder prediction 26 56 - -
Lapu1g01619 492 Gene3D Phosphorylase Kinase; domain 1 122 216 - -
Lapu1g01619 492 MobiDBLite consensus disorder prediction 78 100 - -
Lapu1g01619 492 ProSiteProfiles Protein kinase domain profile. 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01619 492 CDD STKc_GSK3 132 424 IPR039192 -
Lapu1g01619 492 MobiDBLite consensus disorder prediction 9 23 - -
Lapu1g01619 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Lapu1g01619 492 ProSitePatterns Protein kinases ATP-binding region signature. 143 167 IPR017441 GO:0005524
Lapu1g01619 492 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 101 448 - -
Lapu1g01619 492 FunFam Shaggy-related protein kinase kappa 217 459 - -
Lapu1g01619 492 FunFam Glycogen synthase kinase-3 beta 121 216 - -
Lapu1g01619 492 MobiDBLite consensus disorder prediction 59 77 - -
Lapu1g01619 492 SMART serkin_6 137 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01619 492 MobiDBLite consensus disorder prediction 1 100 - -
Lapu1g01619 492 SUPERFAMILY Protein kinase-like (PK-like) 136 453 IPR011009 -
Lapu1g01619 492 Gene3D Transferase(Phosphotransferase) domain 1 217 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01619 Lapu-Chr1 29028315 29033527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01619 143 424 Core Cell Cycle Gene Families AT1G76540 35.593 1.02e-53 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lapu1g01619 Pkinase 8.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01619 K00924 - gmx:100786458 855.899