Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01618 ATGAGTTTTGGGGGGTTTCTTGAGGCCAAACAAAGTGGTGGAGGTGGTAGGATCGTATCAGATATTCCTTACAGCAACGGTTCCAACCACAGCAACGATATAATGCCCTCTGGTGCAATCTCGCAGCCTCGTTTAGCCACTCCTACTTTGGCCAAATCCATGTTCAACTCTCCTGGCCTTTCTCTTGCACTTCAAAGTGATGTGGATGGACAAGGGGATATGAACAGATTAATGCCCGAGAATTTTGAGCAAAATGGGTTGAGAAGGAACCGGGAGGAGGAGCATGAAAGCAGATCTGGCAGTGATAACATGGATGGTGCTTCTGGTGATGATTTTGATGCCGCCGACAACCCGCCAAGAAAAAAGCGTTATCACCGACACACTCCTCAGCAAATTCAAGAGCTTGAAGCGCTTTTCAAGGAGTGTCCTCACCCGGATGAGAAGCAAAGACTTGAACTCAGCAAAAGGCTGAATTTGGAAACGAGGCAAGTAAAGTTTTGGTTCCAAAATCGAAGAACACAAATGAAGACACAATTGGAACGGCACGAGAACTCGCTGCTAAGGCAAGAGAATGACAAGCTTAGAGCGGAGAACATGTCTATGAGGGAAGCTATGAGAAATCCTATGTGCTCAAACTGTGGAGGTCCTGCAATGATTGGTGAGATTTCACTTGAAGAACAGCATCTCAGGATTGAGAATGCTAGATTGAAGGATGAACTGGACCGTGTTTGTGCACTCGCTGGCAAGTTTTTGGGTCGCCCCATTTCTTCTTTAACAAGCTCAATTGGGCCTCCGTTGCCGAACTCAAGCTTGGAGCTTGGGGTTGGGAGCAATGGTTTTGGAGGTTTGAGCACTGTGCCTTCAACATTGCCTGATTTTGGGGTGGGGATATCAAGCCCCTTAGCCATGATGTCACCTTCAACTAGACCAACGGCAACATCAACTGTGGTGACTCCTGGCCTTGACAGATCAGTAGAGAGGTCTATTGTTTTGGAACTTGCTTTGGCTGCAATGGATGAGCTGGTGAAGATGGCTCAGACTGGGGAGCCTCTTTGGATCAGGAGTTTGGAAGGGGGAAGAGAAATTCTCAACTATGAGGAGTACACAAGGACAATGACACCTTGCATTGGTTTGAGACCCAATGGTTTTGTGACCGAGGCCTCTAGACAAACTGGCATGGTCATCATAAACAGCTTGGCTCTTGTTGAAACATTAATGGACTCGAATCGATGGTCAGAGATGTTCCCTTGTATGATTGCTAGAACTTCAACCGCTGAAGTTATATCTAATGGAATAAATGGAACTAGAAATGGTGCCCTTCAGCTTATGCATACTGAACTTCAAGTCCTTTCGCCCTTGGTTCCTGTTCGTGAGGTCAATTTTCTACGCTTTTGCAAGCAGCACGCAGAGGGCTTGTGGGCAGTGGTGGATGTGTCCATAGACACCATCCGAGAAACTTCTGGTGCACCCACTTTTGTGAACTGTAGGAGGCTTCCTTCTGGTTGCGTGGTGCAAGATATGCCAAATGGTTACTCTAAGGTGACATGGGTGGAACATGCAGAATACGACGAAAGCCAAGTTCACCAGCTGTACAGACCCTTGTTGAGCTCAGGCACGGGGTTGGGTGCACAACGTTGGGTTGCCACCCTTCAACGCCAATGCGAGTGCTTAGCCATTCTAATGTCCTCAGCAGTTCCCTCTAGAGAACATTCAGCAGCAATAAGCTCAGGTGGAAGGAGGAGCATGCTGAAGCTGGCACAACGCATGACGAACAATTTCTGTGCTGGTGTTTGTGCCTCCACGGTGCACAAGTGGAACAAGCTGAACGCGGGGAACGTGGGGGAGGACGTGAGGGTGATGACGAGGAAGAGCGTGGACGACCCTGGGGAGCCCCCGGGTATTGTCCTAAGCGCGGCAACATCGGTGTGGCTGCCGGTGTCGCCGCAAAGACTGTTCGACTTCCTGCGTGACGAGAGGCTCCGGAGTGAGTGGGACATTCTGTCGAACGGTGGACCCATGCAAGAGATGGCTCACATTGCCAAGGGACAGGACCATGCTAACTGTGTCTCCCTCCTGAGAGCCAGTGCTATGAATGCGAACCAGAGCAGCATGTTGATTTTGCAGGAGACGTGCACCGACGCGTCGGGGTCGCTTGTGGTGTACGCGCCGGTGGACATTCCCGCCATGCACGTTGTGATGAACGGCGGCGACTCTGCCTATGTGGCGCTTCTTCCGTCGGGGTTCGCCATCGTGCCGGACGGATCCATGGCCGGCGGAGAGGAGCACGGAGGCGCGTCGCAGAAGAGGGGGAGTGGATGTCTTCTGACGGTGGCGTTTCAGATTCTGGTGAATAGCCTCCCGACGGCGAAGCTGACGGTGGAGTCGGTGGAGACTGTGAACAACCTCATCTCGTGCACCGTGCAGAAGATAAAAGCAGCGCTTCACAGCGAGAGTTGA 2457 0.5116 MSFGGFLEAKQSGGGGRIVSDIPYSNGSNHSNDIMPSGAISQPRLATPTLAKSMFNSPGLSLALQSDVDGQGDMNRLMPENFEQNGLRRNREEEHESRSGSDNMDGASGDDFDAADNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLNLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSMREAMRNPMCSNCGGPAMIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLTSSIGPPLPNSSLELGVGSNGFGGLSTVPSTLPDFGVGISSPLAMMSPSTRPTATSTVVTPGLDRSVERSIVLELALAAMDELVKMAQTGEPLWIRSLEGGREILNYEEYTRTMTPCIGLRPNGFVTEASRQTGMVIINSLALVETLMDSNRWSEMFPCMIARTSTAEVISNGINGTRNGALQLMHTELQVLSPLVPVREVNFLRFCKQHAEGLWAVVDVSIDTIRETSGAPTFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYRPLLSSGTGLGAQRWVATLQRQCECLAILMSSAVPSREHSAAISSGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVGEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHANCVSLLRASAMNANQSSMLILQETCTDASGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGSMAGGEEHGGASQKRGSGCLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHSES* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01618 818 Pfam START domain 332 556 IPR002913 GO:0008289
Lapu1g01618 818 ProSitePatterns 'Homeobox' domain signature. 153 176 IPR017970 GO:0000981|GO:0006355
Lapu1g01618 818 MobiDBLite consensus disorder prediction 85 101 - -
Lapu1g01618 818 CDD homeodomain 120 178 IPR001356 GO:0003677
Lapu1g01618 818 CDD START_ArGLABRA2_like 327 555 - -
Lapu1g01618 818 SUPERFAMILY Bet v1-like 585 811 - -
Lapu1g01618 818 Gene3D - 108 194 - -
Lapu1g01618 818 Gene3D - 392 543 IPR023393 -
Lapu1g01618 818 ProSiteProfiles START domain profile. 323 559 IPR002913 GO:0008289
Lapu1g01618 818 ProSiteProfiles 'Homeobox' domain profile. 118 178 IPR001356 GO:0003677
Lapu1g01618 818 SMART START_1 332 556 IPR002913 GO:0008289
Lapu1g01618 818 Pfam Homeodomain 121 176 IPR001356 GO:0003677
Lapu1g01618 818 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 117 815 IPR042160 -
Lapu1g01618 818 FunFam Homeobox-leucine zipper protein GLABRA 2 332 555 - -
Lapu1g01618 818 SMART HOX_1 119 182 IPR001356 GO:0003677
Lapu1g01618 818 Coils Coil 172 207 - -
Lapu1g01618 818 SUPERFAMILY Homeodomain-like 104 178 IPR009057 -
Lapu1g01618 818 SUPERFAMILY Bet v1-like 326 556 - -
Lapu1g01618 818 MobiDBLite consensus disorder prediction 66 128 - -
Lapu1g01618 818 FunFam Homeobox-leucine zipper protein HDG1 108 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01618 Lapu-Chr1 29002674 29009766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01618 1 818 Homeobox Transcription Factor Family AT3G61150 65.066 0.0 1041
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu1g01618 START 1.4e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01618 K09338 - gmx:100787537 1499.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01618 1 29002674 29009766 Lapu1g01618 1 29002674 29009766 ECH
Lapu1g01618 1 29002674 29009766 Lapu10g00070 10 2206055 2212849 PCT