Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01597 ATGTTGGGTTCAGGTACCAATTTGGTGACCACGGTCATTGGGTTTGGCATGAGTGCCACTTTCATTGTGTTTGTCTGCACCAGAATCATTTGTGGAAGGCTAAGAGGGGGTGTTGAATCTCGGATGGTGTATGAGATTGAATCAAGAATTGATATAGAACAGCCAGAACATCATGTTAATGACCCTGAATCAGAACCTGTTCTGCTTGATGCAATCCCTACTTTGAAGTTCAACCAAGAGGCTTTCAGTTCCCTTGAACACACACAGTTAAGTTTTAGTCTCTCAATTGTAGGTCACAGAGAACAAGTTCCTTATGTTTTCCTTGATAGAAGATTTCACACTGTTACAGAAATTTCTTACTACATAACATTGTGTGTAATATGTTTGGCAGATTACAAAGAAAGAGAAGTATTGCGTATCATGCCCAAATGTGGCCACACTTTTCATCTTTCTTGCATTGATATATGGCTGAGAAAACAATCTACCTGTCCAGTATGCCGTCTGCCATTGAAAAACTCTTCTGAAACAAAACATGTGAGACCTGTGACGTTTACCATGAGCCAATCCCTTGACGAGTCTCACACATCAGAAAGAAATGAAAATACCGAGAGACATGTTGAACCTATACCTACTGCAGCCAGTAACACTTTACAACCAACTTCAGGCGAACAAGGAGCTAGGCAATGA 687 0.4076 MLGSGTNLVTTVIGFGMSATFIVFVCTRIICGRLRGGVESRMVYEIESRIDIEQPEHHVNDPESEPVLLDAIPTLKFNQEAFSSLEHTQLSFSLSIVGHREQVPYVFLDRRFHTVTEISYYITLCVICLADYKEREVLRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNSSETKHVRPVTFTMSQSLDESHTSERNENTERHVEPIPTAASNTLQPTSGEQGARQ* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01597 228 PANTHER OS11G0150450 PROTEIN 1 202 - -
Lapu1g01597 228 MobiDBLite consensus disorder prediction 185 228 - -
Lapu1g01597 228 Pfam Ring finger domain 125 167 IPR001841 -
Lapu1g01597 228 SUPERFAMILY RING/U-box 124 173 - -
Lapu1g01597 228 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Lapu1g01597 228 MobiDBLite consensus disorder prediction 208 228 - -
Lapu1g01597 228 CDD RING-H2_EL5-like 125 167 - -
Lapu1g01597 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 177 IPR013083 -
Lapu1g01597 228 SMART ring_2 125 166 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01597 Lapu-Chr1 28747108 28748868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01597 83 170 C3H Transcription Factor Family AT4G10160 44.318 5.96e-18 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01597 - - gmx:100780922 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01597 1 28747108 28748868 Lapu1g01597 1 28747108 28748868 ECH
Lapu1g01597 1 28747108 28748868 Lapu10g00056 10 2012907 2013942 PCT