Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01568 ATGAACAATAGAGATAGAGAGAGGTACCCACCAGGGATGGGGTTAGGACGAGGGTTGAACTCGAACCCTGGGTTTCAACCCAGGCCACATCAGCAACATCAATATGTGCAGAGGCACATGGTGCAGCACCATCATCCGCAGCAGTATCAACAGAACCACCACCACCACCATCAGCAACAGCAACAACAGCATCATCAACATCAGCAGCAGCAGCAACAACAACAGCAACAGTGGTTGAGAAGGAACCAGTTAGGTGGTGGGACCGACACCAACGTTGTCGAGGAGGTTGAGAAGACTGTACAGTCTGAAGCCGTTGACTCAAGTTCACAAGATTGGAAGGCAAGACTAAATATCCCTGCACCAGATACACGCTACAAGACAGAGGACGTGACAGCAACTAAAGGCAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTTATGGGAATATATGAGAAGGGTTTTGAAAGGCCATCTCCTATCCAAGAAGAAAGCATTCCAATTGCACTTACTGGTAGCGACATTCTTGCAAGGGCTAAAAATGGAACGGGCAAAACAGCTGCATTTTGTATTCCTGCATTGGAAAAAATTGATCAGGATAATAATGTTATTCAAGGCTTCACTCATGTCTTGATCGTTGCCTTTTCTATATTCTGTTATGCAGTTGTAATATTGGTCCCAACTCGAGAGCTGGCTTTGCAAACATCCCAAGTGTGTAAAGAACTTGGAAAACATTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAAAGATGATATTATGCGTTTATATCAACCAGTTCATCTGCTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAAAAAGGGTGTTTGCGTTCTGAAAGATTGTTCTATGCTTGTTATGGATGAGAATGTTTACTGGATGGTGATGTACGAAGAGATTGACATGTTATATGTCATGTTTCTTGTTCTTAGGTTTCTTTATTTCCTCTTTGTATCTGCTGATAAGCTTCTCTCCCCAGAGTTCCAACCTTCAATAGAACAGCTGATTCAATTTCTTCCTGGAACTCGTCAAATTCTGATGTTTTCTGCTACATTTCCTGTTACTGTTAAGGACTTCAAGGATAGATATCTCCGTAAGCCATACGTTATTAACCTTATGGATGAGCTAACTTTGAAAGGTATTACACAATATTATGCATTTGTGGAAGAGAGACAGAAAGTCCACTGCCTAAATACTCTTTTCTCTAAGCTGCAAATAAACCAGTCAATCATTTTCTGCAATTCCGTGAATCGGGTTGAACTTCTTGCCAAGAAAATCACTGAACTTGGGTATTCGTGTTTCTATATTCATGCAAAGATGTTGCAAGACCACCGTAATAGAGTATTTCATGACTTCCGCAATGGTGCCTGCAGAAATCTTGTTTGTACTGATCTTTTCACTAGGGGAATAGACATCCAAGCAGTCAATGTTGTTATTAATTTTGATTTTCCGAAGAACTCAGAAACCTATTTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTAGGTTTAGCGGTGAACTTGATCACCTATGAGGATCGCTTCAATTTATATAGAATTGAACAAGAACTTGGCACTGAAATAAAACAAATTCCGCCACACATTGATCAAGCAATATATTGCCGGTGA 1671 0.4117 MNNRDRERYPPGMGLGRGLNSNPGFQPRPHQQHQYVQRHMVQHHHPQQYQQNHHHHHQQQQQQHHQHQQQQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSEAVDSSSQDWKARLNIPAPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQGFTHVLIVAFSIFCYAVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDENVYWMVMYEEIDMLYVMFLVLRFLYFLFVSADKLLSPEFQPSIEQLIQFLPGTRQILMFSATFPVTVKDFKDRYLRKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01568 556 MobiDBLite consensus disorder prediction 24 47 - -
Lapu1g01568 556 MobiDBLite consensus disorder prediction 63 78 - -
Lapu1g01568 556 Pfam Helicase conserved C-terminal domain 408 514 IPR001650 -
Lapu1g01568 556 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 136 164 IPR014014 GO:0003724
Lapu1g01568 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 536 IPR027417 -
Lapu1g01568 556 Pfam DEAD/DEAH box helicase 161 302 IPR011545 GO:0003676|GO:0005524
Lapu1g01568 556 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 167 383 IPR014001 -
Lapu1g01568 556 Coils Coil 57 77 - -
Lapu1g01568 556 SMART ultradead3 155 397 IPR014001 -
Lapu1g01568 556 MobiDBLite consensus disorder prediction 1 78 - -
Lapu1g01568 556 CDD DEADc_DDX6 138 384 - -
Lapu1g01568 556 SUPERFAMILY beta-sandwich domain of Sec23/24 23 91 - -
Lapu1g01568 556 FunFam ATP-dependent RNA helicase DDX6 387 556 - -
Lapu1g01568 556 Gene3D - 89 386 IPR027417 -
Lapu1g01568 556 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 329 555 - -
Lapu1g01568 556 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 393 553 IPR001650 -
Lapu1g01568 556 SMART helicmild6 433 514 IPR001650 -
Lapu1g01568 556 MobiDBLite consensus disorder prediction 48 62 - -
Lapu1g01568 556 Gene3D - 387 556 IPR027417 -
Lapu1g01568 556 CDD SF2_C_DEAD 394 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01568 Lapu-Chr1 28501285 28508446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01568 136 553 Eukaryotic Initiation Factors Gene Family AT3G19760 33.810 8.45e-83 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01568 K12614 - fve:101307921 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01568 1 28501285 28508446 Lapu1g01568 1 28501285 28508446 ECH