Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01563 ATGGATCGTGGGGACCAAATGGCGTTATCCGGGTCTTACTATATGCAGCAAAGAGGAATACCTGGATCTGGAGCACAGGCTGAGTTACATATGTCACCTAATATTCGACCACTCTCTAATCCGAATCTACCATTTCAATCCAGCATTGGTGGTGGTTCCATTGGATCCACATTGCCATTAGAGTCTTCAGCAATTTCGGCTCATGGTGTGAATATGGGAGCACCTCCTGGGGCACCTCCAGGGGAACCTGTTAAAAGGAAGAGGGGAAGGCCTAGGAAATATGGAACTGATGGAACTGTGTCATTGGCATTGACTCCAACATCATCTAGTCATCCTGGGGCCTTGACACAGGGCCAGAAACGGGGCAGAGGGCGCCCACCAGGAACTGGGAAAAAACAGCAGTTGGCTTCTCTTGGTGAGTTGATGTCTGGTTCAGCTGGGATGGGATTCACTCCTCATATCATCAACATTGCAAGTGGAGAAGACATTGCAACAAAAATCATGGCATTTTCTCAGCAGGGACCTAGAGCTGTATGTATTTTGTCAGCCAATGGCGCTGTCTCAACTGTCACACTTCGGCAGCCATCAACTTCAGGAGGCACTGTCACATACGAGGTTTGGCACTTTCTCAGTGTTATGTATTTGTTGAAGATACACATAGAGCATGGGCGTTTCGAGATAGTGTGCCTATCAGGCTCTTACTTGGTCACTGATACTAGTGGTTCACGCAATCGAACTGGTGGACTGAGTGTGTCCCTTGCTAGTCCTGACGGCCGTGTCATTGGTGGAGGAGTTGGTGGAGTTCTTATTGCATCAAGTCCTGTTCAGGTGGTAGTTGGGAGTTTTCAATGGGGTGGATCAAAGACAAAGAACAAGAAGAAGGAAAGCTCGGAAGGTGCAGCAGAAGTTGGTGTGGAGTCAGAGCATCAGGGAGTTCATAATCCAGTGGCACTGAACAGCATCTCACCAAATCAAAACCTTTCTCCAACACCTTCATCTTTAAGTCCTTGGTCGCAATCACGACCGTTGGATATGCGTAATTCCCATGTGGACATTGACTTGATGCGTGGGTGA 1074 0.4814 MDRGDQMALSGSYYMQQRGIPGSGAQAELHMSPNIRPLSNPNLPFQSSIGGGSIGSTLPLESSAISAHGVNMGAPPGAPPGEPVKRKRGRPRKYGTDGTVSLALTPTSSSHPGALTQGQKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIINIASGEDIATKIMAFSQQGPRAVCILSANGAVSTVTLRQPSTSGGTVTYEVWHFLSVMYLLKIHIEHGRFEIVCLSGSYLVTDTSGSRNRTGGLSVSLASPDGRVIGGGVGGVLIASSPVQVVVGSFQWGGSKTKNKKKESSEGAAEVGVESEHQGVHNPVALNSISPNQNLSPTPSSLSPWSQSRPLDMRNSHVDIDLMRG* 358
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01563 357 CDD DUF296 151 282 IPR005175 -
Lapu1g01563 357 MobiDBLite consensus disorder prediction 67 135 - -
Lapu1g01563 357 MobiDBLite consensus disorder prediction 288 302 - -
Lapu1g01563 357 MobiDBLite consensus disorder prediction 313 345 - -
Lapu1g01563 357 MobiDBLite consensus disorder prediction 100 116 - -
Lapu1g01563 357 ProSiteProfiles PPC domain profile profile. 146 306 IPR005175 -
Lapu1g01563 357 Gene3D - 152 309 - -
Lapu1g01563 357 MobiDBLite consensus disorder prediction 286 357 - -
Lapu1g01563 357 SUPERFAMILY AF0104/ALDC/Ptd012-like 150 284 - -
Lapu1g01563 357 Pfam Plants and Prokaryotes Conserved (PCC) domain 152 283 IPR005175 -
Lapu1g01563 357 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 66 331 IPR039605 GO:0003680
Lapu1g01563 357 SMART AT_hook_2 120 132 IPR017956 GO:0003677
Lapu1g01563 357 SMART AT_hook_2 85 97 IPR017956 GO:0003677
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lapu1g01563 Lapu-Chr1 28455841 28463131 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01563 1 357 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 46.154 1.67e-79 245
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01563 - - gmx:100814615 539.65