Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01556 ATGGCAACTGATATGCAGAGGCTTGTGGGAACGAGCGAGGATGATGAAGAAATGGGAATGGATGTGAAAGATGAGGATGATGACGATGATGATTATGAGGAAAATGGTGGTGAGCAGGGAAATGCTTCAGGGATGATAGGGATTGATGGTGGGAATGAGATAGGAACTGCCACTGGTGACAACAGGTTTCCGCAACACCAGCAGTTTCATGAACAAGTAGGTACCCCGAGTGGAGGTACTAGAAGATCTAGGCCGGTAGAAGAGAAAGAGAGAACAAAGCTAAGAGAGCGGCGCCGGAGGGCCATCACTGCAAGGATCTTGGCCGGGCTTCGCAGGCATGGCAACTACAATCTAAGAGTTAGGGCTGACATAAATGATGTCATTGCTGCTCTAGCAAGGGAGGCTGGATGGGTGGTTCTTCCAGATGGTACTACTTTTCCCTCAAGATCCCAGGGTCAAAAGCCAGCTGGTGGTAATTCTACAATTGTCACTTCATCATCTTCCCATGTGGCTTCACAGCAGACTCCATCCCCTTCTCTTAGGGGAGTTGGTTCTGGCTATAGGAGCCCTTTAGAGTATAGTGCATGTCAAACGAAAGGTGTTTTTGTGCCAACTCCATCTCCTTATGATCTATCCTCAACTTCCCGATCTCAAACATCTATTGTGGGGGATGGAGAAGCACAAAGAGACAACCGTCCTCTGATTGGTGGTTCAATGGATAATGCTGATGAGAAGCAGATTGGCGACTTGCCTCACAGGTTACCAGAGCGTGATTTGGCTGGTACCCCATATGTTCCAGTTTATGTGATGCTGCCGTTAGGGGTGATCAATATAAAGTGTGAGCTTGTTGATCCCGATGGTCTACTAAAGCAGCTGAGGGTGTTGAAATCAGTACATGTTGATGGTGTTATGGTAGATTGTTGGTGGGGAATAGTGGAGGCCCATGCTCCGCAAGAGTATAATTGGAATGGTTACAAGAGACTATTTCAAATGGTGCGAGATGTTAAGCTTAAGCTGCAGGTTGTGATGTCATTTCATGAATGTGGAGGAAATTTTGGTGATGATGTTTGTATTCCATTGCCCCATTGGGTTGCTGAAATTGGTAGGAGCAATCCTGACATTTTTTTCACTGATAGAGAGGGAAGACACAACCCTGAATGTCTTTCTTGGGGAATAGATAAGGAACGAGTTTTAAGAGGTCGTACTGCTGTGGAGGTTTACTTTGATTTCATGAGAAGTTTCCGGGTAGAGTTTGATGAGTATTTTGAGGATGGCTTAATCTCCATGATTGAAGTTGGACTAGGTCCATGTGGAGAATTAAGATACCCATCTTGTCCTGTAAAGCATGGTTGGAGATATCCTGGTATTGGTGAATTCCAGTGCTATGATCAGTATATGTTGAAAAGTCTTAGGAAAGCAGCAGAAGCTAGAGGTCACGCTATTTGGGCTAGAGGACCAGATAATGCTGGTACCTACAATTCTCAGCCACATGAAACAGGTTTCTTTTGTGATGGGGGTGATTATGATGGCTTCTATGGCAGGTTTTTTCTTAGCTGGTACTCTCAGGTTTTAGTTGATCATGGAAATCGGGTACTTTCTCTGGCAAAATTAGCTTTTGAGGGATCTTGTGTTACTGCAAAGTTATCCGGTATTTACTGGTGCTACAAGACTGCAAGTCATGGTGCTGAATTGACTGCTGGGTACTATAACCCATGCAATCGTGATGGCTATGCTGCAATTATGGCAATGCTAAAGATAAATGGAGTTAGCTTAAACATTCCTTGTGTTGAGTTGCACAATTTAAACCAACATGAGGGCTTTCCAGAGACATTTGCCGATCCTGAGGGATTAGTCTGGCAAGTGTTGAATGCTGGTTGGGATGTTGACCTACCAGTCACCAGTCAGAATGGATTTCCTTGCCTAAACAGAGTTAGCTATAACAAGGTTTTGGATCATGCCAAGCCCATGAATGATCCTGATGGAAGGCACTTTTCATCCTTTACTTACCTGAGGCTTAGTCCACTTCTTATGGAACGACAGAACTTCGTTGAGTTTGAACGATTTGTCAAAAGGATGCATGGTAGGGTAACTACTGATTTTGTATTGCTCCCACTGATAGTGTTCTTTGATCCACCTAGCATGAGTCTATTATCTGATCGGAATCGTTTGAGAAGTAATTTTATACAAAACAAGTTTAATATCAGTTATCAGAACACCGTAAAGTATCTGCTAAAGTTGCTATCTTTTGGGACATTGATTAATTAG 2265 0.4371 MATDMQRLVGTSEDDEEMGMDVKDEDDDDDDYEENGGEQGNASGMIGIDGGNEIGTATGDNRFPQHQQFHEQVGTPSGGTRRSRPVEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQGQKPAGGNSTIVTSSSSHVASQQTPSPSLRGVGSGYRSPLEYSACQTKGVFVPTPSPYDLSSTSRSQTSIVGDGEAQRDNRPLIGGSMDNADEKQIGDLPHRLPERDLAGTPYVPVYVMLPLGVINIKCELVDPDGLLKQLRVLKSVHVDGVMVDCWWGIVEAHAPQEYNWNGYKRLFQMVRDVKLKLQVVMSFHECGGNFGDDVCIPLPHWVAEIGRSNPDIFFTDREGRHNPECLSWGIDKERVLRGRTAVEVYFDFMRSFRVEFDEYFEDGLISMIEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYMLKSLRKAAEARGHAIWARGPDNAGTYNSQPHETGFFCDGGDYDGFYGRFFLSWYSQVLVDHGNRVLSLAKLAFEGSCVTAKLSGIYWCYKTASHGAELTAGYYNPCNRDGYAAIMAMLKINGVSLNIPCVELHNLNQHEGFPETFADPEGLVWQVLNAGWDVDLPVTSQNGFPCLNRVSYNKVLDHAKPMNDPDGRHFSSFTYLRLSPLLMERQNFVEFERFVKRMHGRVTTDFVLLPLIVFFDPPSMSLLSDRNRLRSNFIQNKFNISYQNTVKYLLKLLSFGTLIN* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01556 754 Pfam Glycosyl hydrolase family 14 268 688 IPR001554 GO:0000272|GO:0016161
Lapu1g01556 754 MobiDBLite consensus disorder prediction 17 36 - -
Lapu1g01556 754 MobiDBLite consensus disorder prediction 144 186 - -
Lapu1g01556 754 Pfam BES1/BZR1 plant transcription factor, N-terminal 79 213 IPR008540 -
Lapu1g01556 754 MobiDBLite consensus disorder prediction 206 242 - -
Lapu1g01556 754 MobiDBLite consensus disorder prediction 1 96 - -
Lapu1g01556 754 MobiDBLite consensus disorder prediction 144 182 - -
Lapu1g01556 754 SUPERFAMILY (Trans)glycosidases 261 705 IPR017853 -
Lapu1g01556 754 MobiDBLite consensus disorder prediction 58 79 - -
Lapu1g01556 754 MobiDBLite consensus disorder prediction 82 96 - -
Lapu1g01556 754 Gene3D Glycosidases 256 702 - -
Lapu1g01556 754 MobiDBLite consensus disorder prediction 207 225 - -
Lapu1g01556 754 PRINTS Plant beta-amylase signature 683 697 IPR001371 GO:0000272|GO:0016161
Lapu1g01556 754 PRINTS Plant beta-amylase signature 425 434 IPR001371 GO:0000272|GO:0016161
Lapu1g01556 754 PRINTS Plant beta-amylase signature 668 682 IPR001371 GO:0000272|GO:0016161
Lapu1g01556 754 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 559 570 IPR001554 GO:0000272|GO:0016161
Lapu1g01556 754 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 577 600 IPR001554 GO:0000272|GO:0016161
Lapu1g01556 754 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 617 639 IPR001554 GO:0000272|GO:0016161
Lapu1g01556 754 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 342 363 IPR001554 GO:0000272|GO:0016161
Lapu1g01556 754 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 542 558 IPR001554 GO:0000272|GO:0016161
Lapu1g01556 754 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 299 313 IPR001554 GO:0000272|GO:0016161
Lapu1g01556 754 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 435 457 IPR001554 GO:0000272|GO:0016161
Lapu1g01556 754 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 320 338 IPR001554 GO:0000272|GO:0016161
Lapu1g01556 754 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 508 527 IPR001554 GO:0000272|GO:0016161
Lapu1g01556 754 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 225 694 IPR001554 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01556 Lapu-Chr1 28390226 28400053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01556 1 699 Glycoside Hydrolase AT2G45880 64.723 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Lapu1g01556 Glyco_hydro_14 8e-102 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01556 K01177 - gmx:100805560 1273.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01556 1 28390226 28400053 Lapu1g01556 1 28390226 28400053 ECH