Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01546 ATGGCTGTGGTGAGTCCTGTACCTGCAACATCACAAAGAATGGGTTCTGTGAGGTCACCATCTGAGGCTAGTGGGGAAATTTTGGACGAGTCTAATCCAGGTATGGTTGATCAGCCAATCTATGTTGCTGTGACAAAAGAAGTGAAGGAGAGCAAATCAAATCTGATATGGGCAATACAGCATTCCGGAGGAAAGAGGATTCGCATTCTTTATGTTCATGTTCGTGCAACACTGATCCCCCTTCTGGGAGGTAAATTCCCCGCAAGTGCACTAAAAGAAGAGCAGGTTCAAGCATACTGGGAAGAAGAAAAGCAAGGCATGCATAGGACTCTGGACGAATATCTTCAAATCTGTCGACGGATGGGGATGCGAGCAGATATACTATATATTGAAATGGATAGCATTGAAAAAGGAATTTTAGAGCTTGTCTCTCAGCATGACATACGAAAGCTTGTAATGGGAGCAGCATCTGATAAGTACTATAATAGGAGAATGATGGATCTTAGATCTAAGAAAGCCAGTTATGTGTGTAAACAAGCTCCTGCTTCTTGTCACATACAGTTTCTCTGCAAAGGGCACCTTATACACACAAGGGATCACAGTTTGAATGAAAGTAATGCAGAGGTTGCATCTCCTTTGGTGCAGCAAGTGCCAAACTCTGTGAGAACTTTGAGATCACAATCTGCTACATTGGGGCAAGATCTCCGAGCAAATCTAACCAATCATACGCTAGAGTTTTTACGCAGAGCAAGGTCTGCCAGTGATGGACATGGAGCAAGATTTGAGGCTGTTTCTTCTCCAGAAGAAACTGAAGGGTTTTCAACTCCACGTGACAGGATGGGTACAGAAGTAAGTTCTGATGAATCAGATAGGCTGTCAAGGATGAGTCCTTCCGCCTTGTCAACATGCTCTGACAGTGCAGTTGAGCTTGCTTTCACCCCAAGATTTATTACTGAAAGCAGTGAGAACATAGAGTTGACTTTGAATCAGCTGGTTAAAGAGGATTTTCATCGTTCATCTCCTCCTAGTACGCTGCAGGATGGTGGAATAGATGATACTATGTACGACCAGCTTCAACAGGCTATGGCTGAGGCAGAGAATGCTTCACTAACTGCGTTTAAAGAAACTATAATGCGTAGGGAAGCTGAAAAAAAAGCCATTGAAGCTATACGCAAAGCTAAAGCTTCTGAAAGCTTATATACGGAGGAGTTGAACCTGAGGAAATTGGCAGAGGAAGAACTTAGGAAAGAAAAAGAGGAACTTGAGAATGCAAAGAACTTGAGAGACAAGGTTAGGGAAGAACTCTGCGTCGCCCTTGATCAGAAGGTGTCTCTAGAGAGTCAGATTGCATCATCTGAACTTATTATAAAGGAGCTGGAGCAGAAGATTGTATCTGCTGTGGATCTGTTACAAAGCTACAAGAATGAGCGAGAGGAATTGCAGATTCAGCGCGATAATGCATTGAGAGAGGCTGAAGAATTGAGGAAAAAGCAAGGAGAGGCCTCAAGCTCCCATGTGCCTCAATTGTTCTCAGAATTCTCTTTTTCAGAGATTAAAGAAGCAACAAATAACTTCAATCCATCCTTAAAAATTGGAGAAGGTGGATATGGAAGTATATTTAAAGGTGTTTTGAGTTACACTGAGGTGGCTATAAAAAGGTTGCACTCCAACAGCATGCAAGGGCCCTTGGAGTTTCAACAAGAGGTTGATGTGTTGAGCAAGCTAAGGCATCCCAATCTTATCACACTCATTGGAGCCTGCCCAGATGCATGGGCTCTTGTCTATGAGTATTTACCCAACGGAAGCCTTGAAGACCGCCTTGCGTGCAAGGATAACACCCCTCCATTATCATGGCAAACTCGAATTCGTGTTGCTGCTGAACTATGCTCAGCCCTCATCTTTCTCCATTCCAGTAAACCTCACAGCATAGTGCATGGTGACTTGAAACCCTCTAACATTCTCCTTGATGCAAACCTTATTAGCAAGCTTAGTGACTTTGGAATATGTCGAATATTATCGAATTGTGAGAGTTCCAGTAGCAATTCTACAGAGTTTTGGAAAACTGACCCAAAGGGAACATTTTTCTACATGGATCCTGAATTTCTTGCCTCGGGGGAACTTACTCCAAAGTCAGATGTTTATTCATTTGGAATCATATTGTTGAGATTGCTGACTGGGAGACCAGCCTTGGGAATAACAAAGGAAGTGAAATCTGCATTAGATACTGGAAAGTTGAAATCCCTATTGGATCCTTTGGCTGGAGACTGGCCATTTGTGCAGGCTGAACAATTGGCTCGCTTGGCTTTGAGGTGTTGTGATATGAACCGAAAAAGCCGGCCAGATCTTTATTCTGATGTCTGGAGGATACTTGATGCAATGAGGGTTTCTTCTGGAGGCTCAAACTCCTTTGGACTAAGTTCTGAAGGACTTTCACAACCTCCATCATATTTTATTTGCCCAATCTTCCAGGAAGTCATGCGAGATCCACATGTAGCTGCAGATGGTTTTACTTATGAAGCTGAGGCTATACGAGGATGGCTTGATGGTGGTAATGACAACTCACCAATGACTAATAGTAACCTTGCACATCACAATCTTGTTCCCAATCGCGCTCTTCGCTCTGCAATCCAGGATTGGCTTCAGAACCACTGA 2652 0.4333 MAVVSPVPATSQRMGSVRSPSEASGEILDESNPGMVDQPIYVAVTKEVKESKSNLIWAIQHSGGKRIRILYVHVRATLIPLLGGKFPASALKEEQVQAYWEEEKQGMHRTLDEYLQICRRMGMRADILYIEMDSIEKGILELVSQHDIRKLVMGAASDKYYNRRMMDLRSKKASYVCKQAPASCHIQFLCKGHLIHTRDHSLNESNAEVASPLVQQVPNSVRTLRSQSATLGQDLRANLTNHTLEFLRRARSASDGHGARFEAVSSPEETEGFSTPRDRMGTEVSSDESDRLSRMSPSALSTCSDSAVELAFTPRFITESSENIELTLNQLVKEDFHRSSPPSTLQDGGIDDTMYDQLQQAMAEAENASLTAFKETIMRREAEKKAIEAIRKAKASESLYTEELNLRKLAEEELRKEKEELENAKNLRDKVREELCVALDQKVSLESQIASSELIIKELEQKIVSAVDLLQSYKNEREELQIQRDNALREAEELRKKQGEASSSHVPQLFSEFSFSEIKEATNNFNPSLKIGEGGYGSIFKGVLSYTEVAIKRLHSNSMQGPLEFQQEVDVLSKLRHPNLITLIGACPDAWALVYEYLPNGSLEDRLACKDNTPPLSWQTRIRVAAELCSALIFLHSSKPHSIVHGDLKPSNILLDANLISKLSDFGICRILSNCESSSSNSTEFWKTDPKGTFFYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVKSALDTGKLKSLLDPLAGDWPFVQAEQLARLALRCCDMNRKSRPDLYSDVWRILDAMRVSSGGSNSFGLSSEGLSQPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDGGNDNSPMTNSNLAHHNLVPNRALRSAIQDWLQNH* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01546 883 Pfam U-box domain 814 883 IPR003613 GO:0004842|GO:0016567
Lapu1g01546 883 Gene3D HUPs 35 157 IPR014729 -
Lapu1g01546 883 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 50 159 - -
Lapu1g01546 883 Coils Coil 442 497 - -
Lapu1g01546 883 CDD STK_N 39 192 - -
Lapu1g01546 883 Gene3D Transferase(Phosphotransferase) domain 1 598 801 - -
Lapu1g01546 883 SUPERFAMILY RING/U-box 807 882 - -
Lapu1g01546 883 FunFam receptor-like protein kinase FERONIA 488 597 - -
Lapu1g01546 883 SMART serkin_6 525 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01546 883 MobiDBLite consensus disorder prediction 272 290 - -
Lapu1g01546 883 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 812 883 IPR013083 -
Lapu1g01546 883 ProSiteProfiles U-box domain profile. 812 883 IPR003613 GO:0004842|GO:0016567
Lapu1g01546 883 ProSiteProfiles Protein kinase domain profile. 525 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01546 883 MobiDBLite consensus disorder prediction 257 300 - -
Lapu1g01546 883 PANTHER OS02G0152300 PROTEIN 40 878 - -
Lapu1g01546 883 Coils Coil 400 434 - -
Lapu1g01546 883 SMART Ubox_2 816 879 IPR003613 GO:0004842|GO:0016567
Lapu1g01546 883 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672|GO:0006468
Lapu1g01546 883 Pfam Protein kinase domain 529 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01546 883 CDD RING-Ubox_WDSUB1-like 814 869 - -
Lapu1g01546 883 SUPERFAMILY Protein kinase-like (PK-like) 502 783 IPR011009 -
Lapu1g01546 883 Gene3D Phosphorylase Kinase; domain 1 495 597 - -
Lapu1g01546 883 MobiDBLite consensus disorder prediction 1 30 - -
Lapu1g01546 883 ProSitePatterns Protein kinases ATP-binding region signature. 531 552 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01546 Lapu-Chr1 28261025 28268924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01546 1 883 U-box Gene Family AT2G45910 48.053 0.0 797
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lapu1g01546 Pkinase 4.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01546 - - gmx:100807515 1449.11