LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu1g01538	ATGATGGATTTCATAGGTCCAGTGTTGGACATCATAATTCGCTTGTGGGACTGTTGTGCCTACGTCCGTGAGTATGAAGAGAACCTTTCTTGTTTGAGGGACATGGCATCTGACCTTCAAGGCCTTTGGGTTGATGTGAGTGTGAAGGTTCAACTGGCTGAGGCACAGCACCTGACACGTCTGAATGAAGTGAATGATTGGTTGGATAAAGTTGAAGCCATGCAAAGAGAAGTCCAATCTATTCAGCAGAAAGTTGCCCACGTTCAAGAAACACGTAGCAGATATTTGGCAAATTTTCCAACAGGCTGCAGGATGGGAAGGATTGTAACTCAAAAAATAGGTGAGATTCGTGAACTTATTGATAAAGGGCACTTTGATGTAGTGGCTCAGGAAATGCCATATGCTTTGGTAGATGAAATCCCTCTAGAGGTCACAATAGGTCTAGAATCAACCTTTGATGAACTTGGTTCATGTTTTGACGATAATAATGTGGGAGTGATTGGCTTGTTTGGCATGGGGGGTGTAGGAAAGACAACCCTGCTCAAAAAGTTTAACAATGAGTTCCTTCCCTCAAAATTTTATGATGTAGTCATTTGGGTTGTGGTGTCCAAAGAAGCAGATGTAGGGAGTGTTCAACAAAGCATAGGCAACAAATTAAATGTTCCTGTTGGTAAATGGGCTGGTAAGACCATTAATGACAGAGCTATTGTTTTATACAACTTTTTGAAAAGGAAGAAGTTTGTGTTGCTGCTAGATGATTTATGGGAGCGTATAGATCTTCTGAAGTTGGGGATTCCTCTCCCTGATACGGAAAACGGATCTAAAGTGATATTCACAACAAGGTCCATGGAGGTTTGCAGGAACATGGAAGCCAACAGATGCATCAAAGTAGAATGTTTAGCACCAAAGGAAGCATTTGAATTGTTTAGAGAGAAAGTGGGTGAAGAAACTCTCAACTCTCATCCTGAAATATTTCATCTTGCTCAAATTGTGGCCAAGGAGTGTCAGGGACTTCCTCTAGCTCTTATCACTGTCGGCAGATCTATGGCTCGAAAGACTCTCCCCGAGTGGAAACGAGCAGCACGAACTTTGAAGATTTATCCATCAAGATTTTCAGGTATGGTTGACTATGTCTATTGTTTGCTTGAGTTTAGCTATGACAGTTTACCAAGTGCCACTCACAAGTCTTGTTTCTTGTACTGTTCCATCTTCCCTGAGGACTACGATATTAGAAAAGATGAACTCATACAACTGTGGATCGGGGAAGGCCTTTTAGCTGAATTTGGTGATGATGTCTATGAAGAGCGTAACCAAGGAGAAGAAATCATCGCAAGCTTGAAGTTTGCTTGTTTGTTGGAGGACAGTGAGAGAGAAAACAGGATTAAGATGCATGATGTGATCAGAGACATGGCTTTGTGGCTAGCTTGTGATCATGGATCCAACACCAGGTTTTTGGTGAGAGATGGTGCATGCAGCGGTTCAGTTGAAACGTATAATCAGCCAAAGTGGAAAGAAGTAGAGAAAGTATCAGTGTGGCGTCAGCATAGCATTCAAAAGCTCTCAGGAAAACCAGATTTCTCAAATCTCTTGACTATGCTCGTTAGAAATACTGAGATAGCCAACATCCCTGGTGAGATCTTTCTGAATGCAAACAATCTTAGAGTGTTAGACTTGTCGGGTAATAAAAGAGTAAGAGAATTACCTTCTAGTATTGGGGAGTTAGTCCATTTGCAGCATTTGGATCTATCAGGTACTGATATACAAGAATTGCCAAGGGAGCTCCAGAACTTGAAAAAATTGAGGTGCTTGCTGCTGAATTACATTTGCAATAGGCTTGTCTTCCCAAGGAGTTTGATATCAAGTTTGTTGTCATTGCAAGTGTTTAGCAAATTACCATGGGAAGATCAGTTTATTCTTCCTGACTTGGGGGAACCTGAGGAAACTGTCTTGTTGAAAGAACTGGAATGCTTGGAATGCCTTCAAGACATAAGCATTGCTCTCTTTTGCTTTTCTTCTATCCAAGTATTACTGAACTCTCCTAAATTGCGAAGTTGCATTAGACATCTGAGAGTAATTTCTCATTTCAATTCAATGCCACATGTTATATTATTCTCATTGTTGGGAAAAATGCAACATCTAGAAGTATTGTCCATGTCAATTTCTTCATCTTCAAGTTTAGACTATGTCAGGAAAAAGGAGTCTCCATCACAGGGTTCCATGATTGAGTGCATTCCCATAAGTTCTAAGCATACCGAGCATGGTTACATTGTTGGCCTTCGTGAGTTATCCCTTGAAGGTTGTGGTATGTTGAACTTGAATTGGCTCACTCGTGCTCCAAGCCTTCAACTCCTTAGAATATACAATTGTCCCTCCTTGGAAGAAGTCATAGGTGAAGAATTTGGAAATCCAGAAAATGTTTTTTCAAGTCTTGAAATTGTTGATCTAGATTCTTTACCAAAGTTAAGGAGCATATGCTCACAAGTTTTACAATTTCCTTGTCTTAAGGAGATCTGTGTAGCAGATTGTCCAAGGCTGATAAAACTCCCTTTTGATTCCAATAGTGCAAGGAACAGTCTGAAGCACATTAATGGTCAGAAAAGGTGGTGGCGTAAATTGCAGTGGGAAGATGAAGCCACAAGGGATCACTTCGGTTCAAAATATGTACCTCTGCGTAAAATTCGCCAAATACGTTGA	2694	0.4079	MMDFIGPVLDIIIRLWDCCAYVREYEENLSCLRDMASDLQGLWVDVSVKVQLAEAQHLTRLNEVNDWLDKVEAMQREVQSIQQKVAHVQETRSRYLANFPTGCRMGRIVTQKIGEIRELIDKGHFDVVAQEMPYALVDEIPLEVTIGLESTFDELGSCFDDNNVGVIGLFGMGGVGKTTLLKKFNNEFLPSKFYDVVIWVVVSKEADVGSVQQSIGNKLNVPVGKWAGKTINDRAIVLYNFLKRKKFVLLLDDLWERIDLLKLGIPLPDTENGSKVIFTTRSMEVCRNMEANRCIKVECLAPKEAFELFREKVGEETLNSHPEIFHLAQIVAKECQGLPLALITVGRSMARKTLPEWKRAARTLKIYPSRFSGMVDYVYCLLEFSYDSLPSATHKSCFLYCSIFPEDYDIRKDELIQLWIGEGLLAEFGDDVYEERNQGEEIIASLKFACLLEDSERENRIKMHDVIRDMALWLACDHGSNTRFLVRDGACSGSVETYNQPKWKEVEKVSVWRQHSIQKLSGKPDFSNLLTMLVRNTEIANIPGEIFLNANNLRVLDLSGNKRVRELPSSIGELVHLQHLDLSGTDIQELPRELQNLKKLRCLLLNYICNRLVFPRSLISSLLSLQVFSKLPWEDQFILPDLGEPEETVLLKELECLECLQDISIALFCFSSIQVLLNSPKLRSCIRHLRVISHFNSMPHVILFSLLGKMQHLEVLSMSISSSSSLDYVRKKESPSQGSMIECIPISSKHTEHGYIVGLRELSLEGCGMLNLNWLTRAPSLQLLRIYNCPSLEEVIGEEFGNPENVFSSLEIVDLDSLPKLRSICSQVLQFPCLKEICVADCPRLIKLPFDSNSARNSLKHINGQKRWWRKLQWEDEATRDHFGSKYVPLRKIRQIR*	898

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu1g01538	897	Pfam	Leucine rich repeat	528	587	IPR001611	GO:0005515
	Lapu1g01538	897	Coils	Coil	64	91	-	-
	Lapu1g01538	897	PRINTS	Disease resistance protein signature	166	181	-	-
	Lapu1g01538	897	PRINTS	Disease resistance protein signature	335	349	-	-
	Lapu1g01538	897	PRINTS	Disease resistance protein signature	241	255	-	-
	Lapu1g01538	897	PRINTS	Disease resistance protein signature	548	564	-	-
	Lapu1g01538	897	Gene3D	-	300	385	IPR042197	-
	Lapu1g01538	897	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	140	401	IPR027417	-
	Lapu1g01538	897	Gene3D	-	386	472	IPR036388	-
	Lapu1g01538	897	SUPERFAMILY	L domain-like	462	850	-	-
	Lapu1g01538	897	FunFam	Probable disease resistance protein At1g63360	386	473	-	-
	Lapu1g01538	897	PANTHER	NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED	43	861	-	-
	Lapu1g01538	897	Pfam	NB-ARC domain	161	387	IPR002182	GO:0043531
	Lapu1g01538	897	FunFam	Probable disease resistance protein At5g66910	299	385	-	-
	Lapu1g01538	897	ProSiteProfiles	Leucine-rich repeat profile.	576	598	IPR001611	GO:0005515
	Lapu1g01538	897	Gene3D	-	135	299	IPR027417	-
	Lapu1g01538	897	Gene3D	Ribonuclease Inhibitor	492	870	IPR032675	-
	Lapu1g01538	897	Coils	Coil	22	42	-	-
	Lapu1g01538	897	FunFam	Probable disease resistance protein At1g61300	128	293	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu1g01538	Lapu-Chr1	28187081	28189774	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu1g01538	163	471	WRKY Transcription Factor Family	AT5G45050	26.019	9.71e-10	60.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu1g01538	-		K13459	vra:106758404	1578.15