Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01533 ATGATTGGTAACGGGGAGCCTTTGGATTTGTATAAACTTTTCATGGTGGTGAAGAAGAAAGGTGGTTATGATGCTGTTTGTAAGAATAGGTTGTGGGATTTGGTGGGGGAAGAATATGGGTTGGGTGTGAAGGTTGGTACCTCCGTGGAACTTGTGTACAGCAAACACTTGAGTACTCTAGAGACGTGTTTGAAGAATGTTGCTGGTGGCAAATGTGGTTTAGAGGATGATAGAGTTAAGTTTCACAAGCATTTGATGGGGGCACACACTGAATCCATGTTGGATGATTCTGGTGAGGAGGAGGCGGGAGATGAACTCGTGAGGAGGGAGTGTGGCTGTCCAGATGGGAGGAAGTTGTGTGGTAGTAATAGAGTCAAGTGTGTGAAACCAGAGTCGAATGAGGCCGAACATGAGAGTGCATTTGAGTATCTAGATGGGAGTAAGTCATGTGGTAGTAATAGTATGAAGGACAAGAATTCGGATTCTAACGGGGATGAATTTGATAATGTATGTGACTATCTAGATGGGAGGAAGTTGTGTGGTACTAATAGGGTGAACGGGGTGATTCCAGAGTCCAATGAAGTCAAGAAAATTAGGAGCTCAGGACTTGTTGATTTGGATATGCTGGAGGACCATGAGACGGGTGAGCCTATTATAGTAAAATTTTGCGGCTTTAATACTGAAATGGAAATACAAGAAGAGTTTGATGAGAGCAAATTATTAACTGTGGATGCATCCGATGCAGAAAGTGACATGCTTAGATTGTCAGATGGAAGCAAGAGCAGTGAGAAAGACGACGACTATAGTGATGAAGTCTTGATATTGGATCCATCTAGTGTTGACAAACAGAAGTTTGGTCAGAAGAGGAAGAGAGAGTCTATGTCAGAAATGCTAATTTGGATTTCTAGCATTGCTAAAAATCCTTGTGATCCTGCAGTTGGTTCGATTCCTGAAAAGTCTAAGTGGAAGTCTAGCAGTAGTCAGGAGATCTGGAAGCAGGCTTTGTTGTTTCGAGAAGCAGTCTTTCTGAAGAAAGATTTTGAGACAGTCAGTGAACAACTTAGTTGGCAGAGTCAGAAAATACATCCTTCCATGTATGATGATCGCGTTGGGGCAATATACAATTTTAGACAGAGGCTGAAATGTGATAAGAGGTCTTTATTGGGAACATCTACTTCTGATGGAATCTCCTCTTCATCTAGAGCAAGAACACGTGGAGGTTTGGCGAAAACCCCAAGTTCTCAAGCTGAAGATCGCGTGGACAAAAAGTTACTTGGCTCCTGTACTGCACTCTCAAGTCTTGAGAAATGTGGTCGAGTGCACATCCCTGTGGGGCCAAATCATCAAGCTGAAGTGCCAAAATGGACTGCCATGACTTGTGAGAGCGATTCTAAGTGGTTGGGGACCGAAATATGGCCTCCAAAATTTCTAAATTCCAAATGGTGTCTTGTTGAAAGGGATCCAATTGGAAATGGAAGGCAAGATTCATGTGGTTGCCCAGTACAAGGGTCTGTTGATTGTGTGCGGTTTCACGTTGCTGAGAAAAGGTCTAAAGTTAAGATGGAACTGGGTGAGGCTTTTTACCAATGGAATTTAGACAAGGTAGGTGAAGAAGTTAGGAGTTCTTGGACAGAGCAAGATGAGAAGAAGTTCAATGATGTGGTGAAATCAAACCCTGCTTCACTTGATAAATGTTTTTGGGATCATCTCTTTAAAACATTTCCTAAGAAGAGCAGAGAAGATTTGGTCAGCTACTATTTCAATGTCTTTCTTCTGCAGCAGAGAGCATATCAGAATAGGCATACTCCAGATAACATTGATAGTGATGATGACGAATCAGAATTCACACCATTGAGGAAAGTTTTTGGACATCAAACACCAAAATCACGCAGCCTCACATTGTTATCCCCCAAAAAATCCACAGGAAAAAGGGGAAATAACAAGTGA 1947 0.4222 MIGNGEPLDLYKLFMVVKKKGGYDAVCKNRLWDLVGEEYGLGVKVGTSVELVYSKHLSTLETCLKNVAGGKCGLEDDRVKFHKHLMGAHTESMLDDSGEEEAGDELVRRECGCPDGRKLCGSNRVKCVKPESNEAEHESAFEYLDGSKSCGSNSMKDKNSDSNGDEFDNVCDYLDGRKLCGTNRVNGVIPESNEVKKIRSSGLVDLDMLEDHETGEPIIVKFCGFNTEMEIQEEFDESKLLTVDASDAESDMLRLSDGSKSSEKDDDYSDEVLILDPSSVDKQKFGQKRKRESMSEMLIWISSIAKNPCDPAVGSIPEKSKWKSSSSQEIWKQALLFREAVFLKKDFETVSEQLSWQSQKIHPSMYDDRVGAIYNFRQRLKCDKRSLLGTSTSDGISSSSRARTRGGLAKTPSSQAEDRVDKKLLGSCTALSSLEKCGRVHIPVGPNHQAEVPKWTAMTCESDSKWLGTEIWPPKFLNSKWCLVERDPIGNGRQDSCGCPVQGSVDCVRFHVAEKRSKVKMELGEAFYQWNLDKVGEEVRSSWTEQDEKKFNDVVKSNPASLDKCFWDHLFKTFPKKSREDLVSYYFNVFLLQQRAYQNRHTPDNIDSDDDESEFTPLRKVFGHQTPKSRSLTLLSPKKSTGKRGNNK* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01533 648 MobiDBLite consensus disorder prediction 391 417 - -
Lapu1g01533 648 MobiDBLite consensus disorder prediction 602 618 - -
Lapu1g01533 648 Pfam ARID/BRIGHT DNA binding domain 4 60 IPR001606 GO:0003677
Lapu1g01533 648 SUPERFAMILY ARID-like 4 68 IPR036431 GO:0003677
Lapu1g01533 648 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 641 - -
Lapu1g01533 648 MobiDBLite consensus disorder prediction 391 411 - -
Lapu1g01533 648 CDD ARID 4 61 - -
Lapu1g01533 648 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Lapu1g01533 648 MobiDBLite consensus disorder prediction 601 648 - -
Lapu1g01533 648 Gene3D - 1 70 IPR036431 GO:0003677
Lapu1g01533 648 SMART bright_3 2 66 IPR001606 GO:0003677
Lapu1g01533 648 MobiDBLite consensus disorder prediction 626 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01533 Lapu-Chr1 28121656 28126408 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lapu1g01533 ARID 7.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01533 - - vun:114182925 1073.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01533 1 28121656 28126408 Lapu1g01533 1 28121656 28126408 ECH
Lapu1g01533 1 28121656 28126408 Lapu10g00133 10 3062256 3066222 PCT