Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01531 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTAATCTGCAAGGGGCACCAGTGTATTACTATTGCCCACCGACTTTTGAAGAGCATGAGTCTTTAACATCTAATGATGGCACAAGTGCTACACTGAATGCTGGATTTCTGGTTGGTTTGAACCTGGAAGCATCCGTGCCTGATACTTTCCAGCCCCCTCCCGTGCCTCTTCCTTATGACACGGTCTTGGGAGGTTCTGCATCAACAACATATTCTGAATCTGGCAGAGAAACAGTTAGTAGTTTTGAAGCTTTAATTACACGTGAAGATGCTGAAGAATCAAATTGTAAAGCTCAAACCAACTCCACTCCAACATCTCCAAGGAAGGAAGAACTATCAAAACCAAATGAAACTAAAGTATTATCGATGGAAGAAGAGGATGTTTGTCCAATTTGTCTTGAAGAATATGATGTTGAAAATCCTAGAGATTTGACAAAATGTGAACACCATTTTCACCTATCTTGTATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATCAGGAGATGATATTTTGA 558 0.4086 MGGCCCSARKPNLQGAPVYYYCPPTFEEHESLTSNDGTSATLNAGFLVGLNLEASVPDTFQPPPVPLPYDTVLGGSASTTYSESGRETVSSFEALITREDAEESNCKAQTNSTPTSPRKEELSKPNETKVLSMEEEDVCPICLEEYDVENPRDLTKCEHHFHLSCILEWMERSDSCPICDQEMIF* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01531 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 184 IPR013083 -
Lapu1g01531 185 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 37 184 - -
Lapu1g01531 185 SUPERFAMILY RING/U-box 132 183 - -
Lapu1g01531 185 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
Lapu1g01531 185 Pfam Ring finger domain 138 179 IPR001841 -
Lapu1g01531 185 SMART ring_2 139 179 IPR001841 -
Lapu1g01531 185 FunFam Putative E3 ubiquitin-protein ligase RHB1A 115 184 - -
Lapu1g01531 185 MobiDBLite consensus disorder prediction 100 130 - -
Lapu1g01531 185 CDD RING-H2_AIRP1-like 135 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01531 Lapu-Chr1 28095906 28100301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01531 1 185 C3H Transcription Factor Family AT4G00335 55.914 6.94e-68 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01531 - - gmx:100803758 333.569