Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01528 ATGGGTTTTCCGGTAGGGTATCCGGAAGTACTGGTCCCGAAGCTCTTCCTCCACGCGCTCTCGCTCCTCGCGTGCCTCCGCTCCCTCGTCGCCGCGCTCTTCCGCCTCCTCCGCCTCTCCGACCTTCTCGACACCGACGCCGCCGCGCTCGCCTGGCCGCCGGAGTCCCCGCCGCCGCGCGCTCCGACGCTCTCCGCGCTCCTCATCCGCGAGTTTCTCCCCGTGGCGGCGTTCCGTGACCTCGACGGCGCCGGCGAGTCTCCTCCGTCGCCGACGGGATGCGCGGTGTGCCTGAGCGAGTTCTGCGCGGAGGAGGAGATCAGGTGTATGGCGAACTGCAAGCACATGTTCCACCGCGCGTGCGTGGACCGTTGGATCGATCACGATCATAAAACGTGTCCTCTGTGTAGGACACCGTTCGTGCCGGAGCACAAGGTGGAGGAGTATAACCAGCGACTCTGGGCAGCTTCTGGTGTTTCGCAGTTTTACCAAGACGATTACACTCCTTCCCTCTGA 516 0.6473 MGFPVGYPEVLVPKLFLHALSLLACLRSLVAALFRLLRLSDLLDTDAAALAWPPESPPPRAPTLSALLIREFLPVAAFRDLDGAGESPPSPTGCAVCLSEFCAEEEIRCMANCKHMFHRACVDRWIDHDHKTCPLCRTPFVPEHKVEEYNQRLWAASGVSQFYQDDYTPSL* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01528 171 ProSiteProfiles Zinc finger RING-type profile. 94 137 IPR001841 -
Lapu1g01528 171 PANTHER RING ZINC FINGER PROTEIN-RELATED 20 157 - -
Lapu1g01528 171 SMART ring_2 94 136 IPR001841 -
Lapu1g01528 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 146 IPR013083 -
Lapu1g01528 171 SUPERFAMILY RING/U-box 87 146 - -
Lapu1g01528 171 Pfam Ring finger domain 94 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01528 Lapu-Chr1 28068821 28069518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01528 1 158 C3H Transcription Factor Family AT1G63840 44.025 4.65e-48 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01528 K16281 - gmx:100813224 247.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01528 1 28068821 28069518 Lapu1g01528 1 28068821 28069518 ECH
Lapu1g01528 1 28068821 28069518 Lapu10g00141 10 3185775 3186597 PCT