Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01524 ATGGCGAGAGAGAGAGAGGCGGGAAACGAGTCGGACGAGTCGACTCGGTCAGAAGAGGAGTCTGACCCGGTGGAGGAGGTGCAGCGAGTCATTGAATCGGTGGTTCAGTTCGGGGATTACCGGAGGACGCAGCGGAGGGAGTGCCACAACCTCGTGCGCCGTTTCAAGCTCATGTTGCCCATCTTGGATGAGCTTCGCGACCTCCCACAACCCTTTCCAAAAAACGGCGTCGCTTGGTTAGTCAAATTCAAGGACGCGCTTTTGTTAGCCAAGGATTTGTTGAAATTGTGCAGCCAAGGAAGCAAGATTCATCTCTCTTTGGAGACCGAGGCAATAATGGTGACGTTTCAGAAAGTGTACGAGAGATTAAGCCAAGCGTTTGATGGCGTGCCTTGTGATGAATTGGGTATCTCGGATGAAGTCAAAGAGCAGCTTGCGCTAATGCACGTGCAACTCAGGCGAGCCAGGAGAAGAACTGATACACAGGACATAGAACTTGCGATGGATATGATGGTAGTGTTCTCTGATGAGGATGATAGAAATTCTGATAGTGCTATAATCGAGAGGCTGGCAAAAAAGTTGGATCTTCATAGTGTTGAGGATCTTAACACTGAAACAATGGCCATTCGGAACCTTGCAGCAGAAAGAAAAGGGCAACAGATTGAGAGTACTAAGCGAATAATTGAACTTCTCAACAAATTCAAACGCATTGCAGGCATGGAAGAAACCAGTGTCCTTGATGATCCTGTCGCACCCAAGATGCTAGAGAGGTGCACCTCTTTGGTCATCCCTCACGAGTTTCTCTGCCCAATAACACTAGAAATCATGACAGATCCTGTTATCATATCAAGTGGACAGACATATGAAAGGGAAAGCATACAGAAGTGGTTCCAATCCAACCATAACACATGCCCAAAGACTAGGCAACCTTTGCAACACATGTCATTGGCACCAAACTGTGCATTGAGAAGTTTGATTGAAGAATGGTGTGTGAACAACAACTTCAAGCTTCCTAAAAAGTACGATTCAGCTCAAGAAAGTTGTTCCGTAGACAGCAAAGAGGAAATTCCAGCTTTGGTTGAGAGCCTAGGGTCTATTCATTTAGAAGAGCAGAGAAAGGCAGTGGAGAAGATACGTATGCTATCAAAGGAAAATGCTGAAAACAGGGTTTTGGTTGCTGAACGCGGAGGAATACCACCACTGGTGCAACTACTGTCGTATCCAGATTCAAAAATACAAGAGCATGCTGTGACAGCACTTCTAAACTTATCAATTGATGAGGGTAACAAGAGACTTATATCCACAGAAGGTGCCATTCCAGCTATCATAGAAGTTTTGGAGAATGGTAGTTGGGTGGCTAAGGAAAACTCAGCAGCAACTTTATTTAGCTTGTCAATGCTTGATGAGATTAAAGAGATTGTTGGTCAATCAAATGGGATGCCCCCTTTGGTGAAATTGTTGAAGAATGGAACAGTCAGAGGGAAGAAAGATGCTGTGACAGCTCTTTTTAACTTATCTATCAACCATGCAAACAAAGGTAGGGCCATTAGGGCTGGCATTGTGACACCCTTGCTTCAATTGCTGAAGGACGTAAACTTAGGCATGATTGACGAGGCTCTCTCCATTTTGTTACTCCTTGTATCAAATTCAGAAGGAAGACAGGAGATTGGACAACTTAGTTTCATTGAAACCCTTGTTGAGTTCATGCGAGAAGGGACTCCGAAGAACAAGGAATGTGCAGCATCAGTTCTTCTTGAGTTGTGCTTAAATAACTCATCCTTTATTTTGGCAGCACTTCAGTTTGGAGTGTATGAGCATTTAATGGAAATCAAACAAAATGGAACAAATAGAGCACAGAGGAAAGCAATGACAATCTTAGAGCTCATAAGCAAGAGCGAGCAAATTTAA 1908 0.4423 MAREREAGNESDESTRSEEESDPVEEVQRVIESVVQFGDYRRTQRRECHNLVRRFKLMLPILDELRDLPQPFPKNGVAWLVKFKDALLLAKDLLKLCSQGSKIHLSLETEAIMVTFQKVYERLSQAFDGVPCDELGISDEVKEQLALMHVQLRRARRRTDTQDIELAMDMMVVFSDEDDRNSDSAIIERLAKKLDLHSVEDLNTETMAIRNLAAERKGQQIESTKRIIELLNKFKRIAGMEETSVLDDPVAPKMLERCTSLVIPHEFLCPITLEIMTDPVIISSGQTYERESIQKWFQSNHNTCPKTRQPLQHMSLAPNCALRSLIEEWCVNNNFKLPKKYDSAQESCSVDSKEEIPALVESLGSIHLEEQRKAVEKIRMLSKENAENRVLVAERGGIPPLVQLLSYPDSKIQEHAVTALLNLSIDEGNKRLISTEGAIPAIIEVLENGSWVAKENSAATLFSLSMLDEIKEIVGQSNGMPPLVKLLKNGTVRGKKDAVTALFNLSINHANKGRAIRAGIVTPLLQLLKDVNLGMIDEALSILLLLVSNSEGRQEIGQLSFIETLVEFMREGTPKNKECAASVLLELCLNNSSFILAALQFGVYEHLMEIKQNGTNRAQRKAMTILELISKSEQI* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01524 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515
Lapu1g01524 635 PANTHER U BOX DOMAIN-CONTAINING 45 629 - -
Lapu1g01524 635 CDD RING-Ubox_PUB 264 316 IPR045210 -
Lapu1g01524 635 Gene3D - 454 634 IPR011989 -
Lapu1g01524 635 FunFam RING-type E3 ubiquitin transferase 340 635 - -
Lapu1g01524 635 Pfam U-box domain 263 333 IPR003613 GO:0004842|GO:0016567
Lapu1g01524 635 SUPERFAMILY RING/U-box 262 338 - -
Lapu1g01524 635 ProSiteProfiles U-box domain profile. 262 336 IPR003613 GO:0004842|GO:0016567
Lapu1g01524 635 FunFam RING-type E3 ubiquitin transferase 20 133 - -
Lapu1g01524 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 478 520 IPR000225 GO:0005515
Lapu1g01524 635 SUPERFAMILY ARM repeat 355 631 IPR016024 -
Lapu1g01524 635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 336 IPR013083 -
Lapu1g01524 635 Gene3D - 337 453 IPR011989 -
Lapu1g01524 635 Gene3D - 20 131 IPR036537 GO:0007166
Lapu1g01524 635 MobiDBLite consensus disorder prediction 1 25 - -
Lapu1g01524 635 SMART arm_5 385 425 IPR000225 GO:0005515
Lapu1g01524 635 SMART arm_5 549 589 IPR000225 GO:0005515
Lapu1g01524 635 SMART arm_5 508 548 IPR000225 GO:0005515
Lapu1g01524 635 SMART arm_5 467 507 IPR000225 GO:0005515
Lapu1g01524 635 SMART arm_5 426 466 IPR000225 GO:0005515
Lapu1g01524 635 SMART Ubox_2 266 329 IPR003613 GO:0004842|GO:0016567
Lapu1g01524 635 FunFam RING-type E3 ubiquitin transferase 259 336 - -
Lapu1g01524 635 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515
Lapu1g01524 635 Pfam Armadillo/beta-catenin-like repeat 469 506 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01524 Lapu-Chr1 28015625 28018554 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01524 24 635 U-box Gene Family AT5G42340 63.072 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01524 - - gmx:100777362 1082.01