Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01516 ATGGTGTCCCTCAACCCAAACCCCCCTCAAACTTTTCCCTTCTTTGACACCTTCAACATGGAGGATCCCAATAAGAAGGTTAGAAAACCTTACACCATTACCAAGTCCAGAGAGAACTGGACTGACCACGAGCATGACAAGTTTCTTGAAGCTCTTCACTTATTCGACCGTGACTGGAAGAAGATTGAAGCATTTGTGGGTTCAAAAACAGTTATCCAGATAAGGAGTCATGCACAAAAGTATTTTATGAAAGTTCAGAAGAATGGAACAAGTGAACATGTACCTCCCCCTCGTCCGAAAAGAAAAGCTGCTCATCCATACCCACAAAAGGCTTCTAAAAATGCTCTTACTATATCCAAAGTTACAAGGCCTTTGCAATCTTCATCTACTTTGTCTGAATCCTCATACATTTATAGGCCAGACTCATCATCTGTGCTTAGAACTGCAGTTAGCGGTGTGCCATTGCCATCTTGGGGTTATAATGTTACACCACAAGTTGGTCTTCCTCAAGTGACTAAAGATGATATGGTGTTGAGTCAAAAAGTCAACCCCTTAAATTACTGCCACAGCAGTAGTAATGAGAGCACTCCTAGGGGCCGACCAAGCAGCAAACCGACAGATCAGGGTGACCAAGGCCAGCCAATTAAAGCAATGCCAGATTTTGCGCAAGTCTATAGCTTCATCGGAAGTGTGTTTGATCCAAATGTGACTAATCATTTACAAACACTGCAACAGATGGACCCAATAAATGTGAAAACCGTATTGCTGTTGATGAGAAACCTCTCCACCAATTTAAGGAGTCCTGAGTTTGAGAATGAAAGAAGGATGCTGTCATTGTATAATGTTAAGTCGGAAAGGACAAAATCATCGCAGCCATCTTTCACTGACAGATCAGAGAGTGCTATCTTATCTGCTTAA 918 0.4216 MVSLNPNPPQTFPFFDTFNMEDPNKKVRKPYTITKSRENWTDHEHDKFLEALHLFDRDWKKIEAFVGSKTVIQIRSHAQKYFMKVQKNGTSEHVPPPRPKRKAAHPYPQKASKNALTISKVTRPLQSSSTLSESSYIYRPDSSSVLRTAVSGVPLPSWGYNVTPQVGLPQVTKDDMVLSQKVNPLNYCHSSSNESTPRGRPSSKPTDQGDQGQPIKAMPDFAQVYSFIGSVFDPNVTNHLQTLQQMDPINVKTVLLLMRNLSTNLRSPEFENERRMLSLYNVKSERTKSSQPSFTDRSESAILSA* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01516 305 ProSiteProfiles SANT domain profile. 35 88 IPR017884 -
Lapu1g01516 305 SMART sant 36 84 IPR001005 -
Lapu1g01516 305 PANTHER SWI/SNF COMPLEX-RELATED 20 275 - -
Lapu1g01516 305 MobiDBLite consensus disorder prediction 186 210 - -
Lapu1g01516 305 Gene3D - 39 87 - -
Lapu1g01516 305 MobiDBLite consensus disorder prediction 186 215 - -
Lapu1g01516 305 MobiDBLite consensus disorder prediction 284 305 - -
Lapu1g01516 305 CDD SANT 39 82 IPR001005 -
Lapu1g01516 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 86 IPR017930 -
Lapu1g01516 305 FunFam protein REVEILLE 6 isoform X1 39 87 - -
Lapu1g01516 305 Pfam Myb-like DNA-binding domain 37 82 IPR001005 -
Lapu1g01516 305 MobiDBLite consensus disorder prediction 88 110 - -
Lapu1g01516 305 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Lapu1g01516 305 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 84 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01516 Lapu-Chr1 27940085 27949534 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu1g01516 Myb_DNA-binding 2.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01516 - - gmx:100791774 488.419