Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01508 ATGGCGGAGGATTGGGATCTACATGCGGTGGTCAGAGGTTGCTCCACCGTCACATCATCCTCCGTGTCTTCTTCTTCCTCCTCCTCCTCCTCCCCTGGTTTTGCCTCTTGTTACTTTCACCCTGGAGGTGTTTCGTCCGCGTCTTCTTCTTCTGGCTTCTCCATCTTTAAAGGTGAACAAGGAAGCCAAGTTTCGTCGCTTTCTGCGTACCCCTTTGAGGCAAGGAGTTCCATTGAGGAGTTGCATGAGCTTTGCAGGCCTTTCTTCTCCAAATCTCAGCCTCTCTCGTTGCAAGTCTCTTCCCCCTTGTCCTCACTCTCTTCCTATTCCTCTGCGCCACCCAAAACGGTTTCGACTCAAGAGAAGCAACAACAACAGCGGAACAAGCAGCCACACTCTGTCTCCACCCCGCGATCTAAGAGAAGGAAGAACCAGCTTAAGAAAGTTTGTCAAGTGCCATTTGAAAATCTCTCCTCAGACATATGGGCATGGAGGAAATATGGCCAGAAACCCATAAAGGGGTCTCCTTATCCAAGGGGGTACTACAGATGTAGCAGCTCAAAGGGGTGTTTGGCAAGGAAACAGGTTGAGAGGAACAGATCGGACCCAACAATGTTCATAGTGACTTACACTGCTGAGCACAACCATCCTGCTCCTACTCACAGAAACTCTCTTGCTGGCTCCACACGCCAGAAGCCAGTGGCACCCCAAACTGCCACCACAGAACAAGACTCTGACAAGAGCAAGAGCCTCACAAAACCCTCTTCCCCTGCCATCTCAGGGACAGAGGAAGAGGTTCCAGGACAAGGGGAAAAGTGTGAGAGCAGAGAAGAGAAAGAGGATGTGATGGATGATGAGGAAGAAGATGAATTTGTGTTGTCTGACATGGTGCTAACAGATGACTTCTTTGAGAGTTTGGATGAGCTGAGTCAACTCACTGCCCCTTCTGTTGTCACAGGAGACTGCTTCAGTGACCCCTTTTCAGCTATTGCAATCCCTTCTTGGGTGGCTAGTGGTGCAGCTACTGCTGGTGGATGCATATGA 1044 0.5019 MAEDWDLHAVVRGCSTVTSSSVSSSSSSSSSPGFASCYFHPGGVSSASSSSGFSIFKGEQGSQVSSLSAYPFEARSSIEELHELCRPFFSKSQPLSLQVSSPLSSLSSYSSAPPKTVSTQEKQQQQRNKQPHSVSTPRSKRRKNQLKKVCQVPFENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPVAPQTATTEQDSDKSKSLTKPSSPAISGTEEEVPGQGEKCESREEKEDVMDDEEEDEFVLSDMVLTDDFFESLDELSQLTAPSVVTGDCFSDPFSAIAIPSWVASGAATAGGCI* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01508 347 MobiDBLite consensus disorder prediction 213 288 - -
Lapu1g01508 347 FunFam WRKY transcription factor 22 142 212 - -
Lapu1g01508 347 ProSiteProfiles WRKY domain profile. 153 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu1g01508 347 MobiDBLite consensus disorder prediction 106 133 - -
Lapu1g01508 347 Pfam WRKY DNA -binding domain 160 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu1g01508 347 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 312 IPR044810 GO:0003700
Lapu1g01508 347 Gene3D WRKY domain 142 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu1g01508 347 MobiDBLite consensus disorder prediction 216 259 - -
Lapu1g01508 347 SUPERFAMILY WRKY DNA-binding domain 156 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu1g01508 347 SMART WRKY_cls 158 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu1g01508 347 MobiDBLite consensus disorder prediction 106 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01508 Lapu-Chr1 27850222 27852313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01508 1 347 WRKY Transcription Factor Family AT4G01250 46.667 2.30e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu1g01508 WRKY 3.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01508 K13425 - gmx:100798084 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01508 1 27850222 27852313 Lapu7g02005 7 36287633 36288800 ECH
Lapu1g01508 1 27850222 27852313 Lapu1g01508 1 27850222 27852313 ECH
Lapu10g00164 10 3463845 3465398 Lapu1g01508 1 27850222 27852313 ECH
Lapu10g00531 10 7619508 7635540 Lapu1g01508 1 27850222 27852313 ECH
Lapu1g01508 1 27850222 27852313 Lapu10g00164 10 3463845 3465398 PCT